miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 51 0.8 0.156426
Target:  5'- cGGCGCGugcauuGCGgCGGG-CGGGGGCGGGg -3'
miRNA:   3'- -CUGCGUu-----UGCgGCCCuGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 412 0.69 0.644424
Target:  5'- aGAC-CGAGgGCCcGGGGCGGgcGGGCGGcGg -3'
miRNA:   3'- -CUGcGUUUgCGG-CCCUGUC--UCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 776 0.69 0.641407
Target:  5'- -cCGCcggcGGCGCCGGccucgucgucguccGAC-GAGGCGGGg -3'
miRNA:   3'- cuGCGu---UUGCGGCC--------------CUGuCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 876 0.67 0.723865
Target:  5'- cGCGCGGcggcggcccGCGCCGGGGCcGccGCGGc -3'
miRNA:   3'- cUGCGUU---------UGCGGCCCUGuCucCGCCc -5'
6352 3' -58.6 NC_001847.1 + 958 0.68 0.69441
Target:  5'- gGACGacuGCGCCGGcaccCGGGccGGCGGGg -3'
miRNA:   3'- -CUGCguuUGCGGCCcu--GUCU--CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 1089 0.66 0.815771
Target:  5'- cACGcCGGGCGCCGcGGcCGcGGGCGGc -3'
miRNA:   3'- cUGC-GUUUGCGGC-CCuGUcUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 2078 0.7 0.564319
Target:  5'- uGGCgGCGAGCGCCccgcGGGGCccgcgcGGcGGCGGGc -3'
miRNA:   3'- -CUG-CGUUUGCGG----CCCUG------UCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 2147 0.73 0.415163
Target:  5'- --gGCGAGCGCCGGGcgcCAGGGcuCGGGg -3'
miRNA:   3'- cugCGUUUGCGGCCCu--GUCUCc-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 2176 0.68 0.654471
Target:  5'- aGCGCccGCGCCGccuGGGCGGcGuGCGGGc -3'
miRNA:   3'- cUGCGuuUGCGGC---CCUGUCuC-CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 2188 0.66 0.80717
Target:  5'- -cCGCGAgccGCGCCGcGACcucGGGGCGGc -3'
miRNA:   3'- cuGCGUU---UGCGGCcCUGu--CUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 2243 0.67 0.713132
Target:  5'- gGGCGCGGGCGugugguaguccCCGGGcggcacgcgGCGGAagccgccgucggcGGCGGGg -3'
miRNA:   3'- -CUGCGUUUGC-----------GGCCC---------UGUCU-------------CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 2522 0.67 0.722893
Target:  5'- cGCGCuuuGCuGCCGGGccGCGGGaccgcugcucuccGGCGGGc -3'
miRNA:   3'- cUGCGuu-UG-CGGCCC--UGUCU-------------CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 2543 0.71 0.525152
Target:  5'- cGGCGCucccgcCGCCGGGcCGG-GGCGGc -3'
miRNA:   3'- -CUGCGuuu---GCGGCCCuGUCuCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 2604 0.66 0.797532
Target:  5'- cACGCGAgcccgccGCGCCGGaGguGcuucGGCGGGa -3'
miRNA:   3'- cUGCGUU-------UGCGGCCcUguCu---CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 2974 0.66 0.798415
Target:  5'- cGCGCAGcgcCGCCGGGGCc--GGCGcuGGa -3'
miRNA:   3'- cUGCGUUu--GCGGCCCUGucuCCGC--CC- -5'
6352 3' -58.6 NC_001847.1 + 3005 0.66 0.815771
Target:  5'- uGCGCGgcagcAGCGCCGcccaAUAGGGGCGGu -3'
miRNA:   3'- cUGCGU-----UUGCGGCcc--UGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 3147 0.66 0.80717
Target:  5'- cGGCG---GCGCCGGcGGCGc-GGCGGGc -3'
miRNA:   3'- -CUGCguuUGCGGCC-CUGUcuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 3242 0.72 0.477739
Target:  5'- cGCGCcgugcuCGCCGGcGGCAGGGGCGccGGc -3'
miRNA:   3'- cUGCGuuu---GCGGCC-CUGUCUCCGC--CC- -5'
6352 3' -58.6 NC_001847.1 + 3428 0.67 0.733543
Target:  5'- gGGCGcCAGGCGCagcccaGGGGgucGAGGCGGa -3'
miRNA:   3'- -CUGC-GUUUGCGg-----CCCUgu-CUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 3801 0.71 0.525152
Target:  5'- aGCGCAcGCgGCCGGG-CGGcGGCGGc -3'
miRNA:   3'- cUGCGUuUG-CGGCCCuGUCuCCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.