miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 45092 0.89 0.040207
Target:  5'- cGugGU--GCGCCGGGACGGGGGUGGGg -3'
miRNA:   3'- -CugCGuuUGCGGCCCUGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 31809 0.76 0.286085
Target:  5'- cGugGCGgugggcGGCGCgGGGGCAGAGuGCGaGGa -3'
miRNA:   3'- -CugCGU------UUGCGgCCCUGUCUC-CGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 33541 0.75 0.292724
Target:  5'- gGGCGCGGGCGCCGaagaGGcggcagacgccGCGGAGGCGGc -3'
miRNA:   3'- -CUGCGUUUGCGGC----CC-----------UGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 19263 0.66 0.815771
Target:  5'- cGGCGCGAGcCGgCGGcGCAGcgucugugcGGCGGGc -3'
miRNA:   3'- -CUGCGUUU-GCgGCCcUGUCu--------CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 54494 0.82 0.106735
Target:  5'- cGACGgcGGCGCCGGGGCcGGGGUGGGg -3'
miRNA:   3'- -CUGCguUUGCGGCCCUGuCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 130793 0.81 0.131053
Target:  5'- gGAgGCGGccGCgGCCGGGGCGGAGGCGGc -3'
miRNA:   3'- -CUgCGUU--UG-CGGCCCUGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 101145 0.8 0.160395
Target:  5'- gGGCGCGGGgGCUGGGGCcGGGGcCGGGg -3'
miRNA:   3'- -CUGCGUUUgCGGCCCUGuCUCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 111257 0.8 0.164454
Target:  5'- gGAgGC-GGCGCCGGGuCGGAGGCGGc -3'
miRNA:   3'- -CUgCGuUUGCGGCCCuGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 130695 0.77 0.226141
Target:  5'- gGACGCGGacgucgcggaguGCGCCgaggccgagGGGGCGGAGGCGcGGa -3'
miRNA:   3'- -CUGCGUU------------UGCGG---------CCCUGUCUCCGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 101081 0.76 0.260718
Target:  5'- -cCGCGGGgGCCGGGuCGGcgGGGCGGGc -3'
miRNA:   3'- cuGCGUUUgCGGCCCuGUC--UCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 134902 0.77 0.237214
Target:  5'- gGGCGcCGGGCGUCGGGGCGcGAGGCccGGGc -3'
miRNA:   3'- -CUGC-GUUUGCGGCCCUGU-CUCCG--CCC- -5'
6352 3' -58.6 NC_001847.1 + 55367 0.77 0.220771
Target:  5'- -cCGCGGGCGCCGGaGACGGucGGCGaGGa -3'
miRNA:   3'- cuGCGUUUGCGGCC-CUGUCu-CCGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 8117 0.85 0.072159
Target:  5'- aGCGCAGGCGCgGGGcccCAGGGGCGGGc -3'
miRNA:   3'- cUGCGUUUGCGgCCCu--GUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 7728 0.77 0.242918
Target:  5'- aGGCGCAgGGCGCgGGcGCGGAGGCGGcGg -3'
miRNA:   3'- -CUGCGU-UUGCGgCCcUGUCUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 30435 0.84 0.080156
Target:  5'- gGGCGCGgaGGCGCCGGGGCugcacGAGGUGGGc -3'
miRNA:   3'- -CUGCGU--UUGCGGCCCUGu----CUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 125328 0.78 0.21551
Target:  5'- cGGCgGCGGGCcgggccggucuGCCGGGACaaaGGGGGCGGGa -3'
miRNA:   3'- -CUG-CGUUUG-----------CGGCCCUG---UCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 135039 0.77 0.248736
Target:  5'- gGGCGCgGGGCGCCGGaccCAGGGGCGGa -3'
miRNA:   3'- -CUGCG-UUUGCGGCCcu-GUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 132397 0.76 0.286085
Target:  5'- cGGCGCcgccGCGCCGGGcCGGGGGCcGGu -3'
miRNA:   3'- -CUGCGuu--UGCGGCCCuGUCUCCGcCC- -5'
6352 3' -58.6 NC_001847.1 + 134944 0.83 0.091348
Target:  5'- gGGCGcCGGGgGCgGGGGCGGGGGCGGGg -3'
miRNA:   3'- -CUGC-GUUUgCGgCCCUGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 51 0.8 0.156426
Target:  5'- cGGCGCGugcauuGCGgCGGG-CGGGGGCGGGg -3'
miRNA:   3'- -CUGCGUu-----UGCgGCCCuGUCUCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.