Results 21 - 40 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6352 | 3' | -58.6 | NC_001847.1 | + | 16927 | 0.74 | 0.332856 |
Target: 5'- cGGCGCAGACGCCGGucugcucagugcgcGACGG-GGCGa- -3' miRNA: 3'- -CUGCGUUUGCGGCC--------------CUGUCuCCGCcc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 33541 | 0.75 | 0.292724 |
Target: 5'- gGGCGCGGGCGCCGaagaGGcggcagacgccGCGGAGGCGGc -3' miRNA: 3'- -CUGCGUUUGCGGC----CC-----------UGUCUCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 55367 | 0.77 | 0.220771 |
Target: 5'- -cCGCGGGCGCCGGaGACGGucGGCGaGGa -3' miRNA: 3'- cuGCGUUUGCGGCC-CUGUCu-CCGC-CC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 134944 | 0.83 | 0.091348 |
Target: 5'- gGGCGcCGGGgGCgGGGGCGGGGGCGGGg -3' miRNA: 3'- -CUGC-GUUUgCGgCCCUGUCUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 134800 | 0.73 | 0.415163 |
Target: 5'- gGGCGCgAAGC-CCGGGAgGGAcGCGGGc -3' miRNA: 3'- -CUGCG-UUUGcGGCCCUgUCUcCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 114043 | 0.74 | 0.357875 |
Target: 5'- -uCGCGGGCGgaCGGGGgGGAGGgGGGa -3' miRNA: 3'- cuGCGUUUGCg-GCCCUgUCUCCgCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 31809 | 0.76 | 0.286085 |
Target: 5'- cGugGCGgugggcGGCGCgGGGGCAGAGuGCGaGGa -3' miRNA: 3'- -CugCGU------UUGCGgCCCUGUCUC-CGC-CC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 30435 | 0.84 | 0.080156 |
Target: 5'- gGGCGCGgaGGCGCCGGGGCugcacGAGGUGGGc -3' miRNA: 3'- -CUGCGU--UUGCGGCCCUGu----CUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 6122 | 0.74 | 0.349391 |
Target: 5'- cGGCGCGAGCGCCucgccgccaucggGGGGCucGGuGGCGGu -3' miRNA: 3'- -CUGCGUUUGCGG-------------CCCUG--UCuCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 8117 | 0.85 | 0.072159 |
Target: 5'- aGCGCAGGCGCgGGGcccCAGGGGCGGGc -3' miRNA: 3'- cUGCGUUUGCGgCCCu--GUCUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 132397 | 0.76 | 0.286085 |
Target: 5'- cGGCGCcgccGCGCCGGGcCGGGGGCcGGu -3' miRNA: 3'- -CUGCGuu--UGCGGCCCuGUCUCCGcCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 74138 | 0.74 | 0.342557 |
Target: 5'- uGCGCGuGGCGCCGGGGCGaauGAuGGCGGc -3' miRNA: 3'- cUGCGU-UUGCGGCCCUGU---CU-CCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 7728 | 0.77 | 0.242918 |
Target: 5'- aGGCGCAgGGCGCgGGcGCGGAGGCGGcGg -3' miRNA: 3'- -CUGCGU-UUGCGgCCcUGUCUCCGCC-C- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 130695 | 0.77 | 0.226141 |
Target: 5'- gGACGCGGacgucgcggaguGCGCCgaggccgagGGGGCGGAGGCGcGGa -3' miRNA: 3'- -CUGCGUU------------UGCGG---------CCCUGUCUCCGC-CC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 101145 | 0.8 | 0.160395 |
Target: 5'- gGGCGCGGGgGCUGGGGCcGGGGcCGGGg -3' miRNA: 3'- -CUGCGUUUgCGGCCCUGuCUCC-GCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 54494 | 0.82 | 0.106735 |
Target: 5'- cGACGgcGGCGCCGGGGCcGGGGUGGGg -3' miRNA: 3'- -CUGCguUUGCGGCCCUGuCUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 69445 | 0.73 | 0.423796 |
Target: 5'- gGugGCGGACGgCGGcgcgcgcgcGGCGGcGGCGGGg -3' miRNA: 3'- -CugCGUUUGCgGCC---------CUGUCuCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 83235 | 0.73 | 0.42033 |
Target: 5'- uGACGCc-GCgGCCGGGGCGGcggccgaaagcgcGGCGGGg -3' miRNA: 3'- -CUGCGuuUG-CGGCCCUGUCu------------CCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 24411 | 0.73 | 0.40664 |
Target: 5'- cGugGCGGcCGCCGuGGACAGA-GCGGc -3' miRNA: 3'- -CugCGUUuGCGGC-CCUGUCUcCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 102672 | 0.74 | 0.365713 |
Target: 5'- -cCGCGAGgGCgGGGGgGcGGGGCGGGg -3' miRNA: 3'- cuGCGUUUgCGgCCCUgU-CUCCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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