miRNA display CGI


Results 21 - 40 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 45092 0.89 0.040207
Target:  5'- cGugGU--GCGCCGGGACGGGGGUGGGg -3'
miRNA:   3'- -CugCGuuUGCGGCCCUGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 45497 0.74 0.373667
Target:  5'- --aGCAAACGcCCGGGGCGGgcgccgccgccGGGCGGc -3'
miRNA:   3'- cugCGUUUGC-GGCCCUGUC-----------UCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 130662 0.74 0.365713
Target:  5'- gGACGCcGGCGCCaGGGACgcgGGGGGCGc- -3'
miRNA:   3'- -CUGCGuUUGCGG-CCCUG---UCUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 15785 0.75 0.30636
Target:  5'- cGGCgGCAAGCGCCGcGcGGCgGGAGGCGGcGg -3'
miRNA:   3'- -CUG-CGUUUGCGGC-C-CUG-UCUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 131081 0.77 0.231622
Target:  5'- cGAgGCuGAgGCCGGGACuGGGGcCGGGa -3'
miRNA:   3'- -CUgCGuUUgCGGCCCUGuCUCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 84456 0.73 0.423796
Target:  5'- uGCGCGGGggguggggaGCgGGGGgGGGGGCGGGg -3'
miRNA:   3'- cUGCGUUUg--------CGgCCCUgUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 54545 0.73 0.415163
Target:  5'- gGGCGCAGACGgCGGGggcggcGCGGAGgacgacggccccGCGGGc -3'
miRNA:   3'- -CUGCGUUUGCgGCCC------UGUCUC------------CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 111257 0.8 0.164454
Target:  5'- gGAgGC-GGCGCCGGGuCGGAGGCGGc -3'
miRNA:   3'- -CUgCGuUUGCGGCCCuGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 27208 0.74 0.342557
Target:  5'- gGACGgGcGCGCCGGGGCGcucGAGcuGCGGGu -3'
miRNA:   3'- -CUGCgUuUGCGGCCCUGU---CUC--CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 16927 0.74 0.332856
Target:  5'- cGGCGCAGACGCCGGucugcucagugcgcGACGG-GGCGa- -3'
miRNA:   3'- -CUGCGUUUGCGGCC--------------CUGUCuCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 51 0.8 0.156426
Target:  5'- cGGCGCGugcauuGCGgCGGG-CGGGGGCGGGg -3'
miRNA:   3'- -CUGCGUu-----UGCgGCCCuGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 130793 0.81 0.131053
Target:  5'- gGAgGCGGccGCgGCCGGGGCGGAGGCGGc -3'
miRNA:   3'- -CUgCGUU--UG-CGGCCCUGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 102553 0.73 0.423796
Target:  5'- aGAUGCAGcACGaucccagcuCUGGGGCAGcGGCGGGc -3'
miRNA:   3'- -CUGCGUU-UGC---------GGCCCUGUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 42616 0.73 0.423796
Target:  5'- cGGCGC---CGCCGcGGAgGGGGGCGGc -3'
miRNA:   3'- -CUGCGuuuGCGGC-CCUgUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 102672 0.74 0.365713
Target:  5'- -cCGCGAGgGCgGGGGgGcGGGGCGGGg -3'
miRNA:   3'- cuGCGUUUgCGgCCCUgU-CUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 135039 0.77 0.248736
Target:  5'- gGGCGCgGGGCGCCGGaccCAGGGGCGGa -3'
miRNA:   3'- -CUGCG-UUUGCGGCCcu-GUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 134902 0.77 0.237214
Target:  5'- gGGCGcCGGGCGUCGGGGCGcGAGGCccGGGc -3'
miRNA:   3'- -CUGC-GUUUGCGGCCCUGU-CUCCG--CCC- -5'
6352 3' -58.6 NC_001847.1 + 54494 0.82 0.106735
Target:  5'- cGACGgcGGCGCCGGGGCcGGGGUGGGg -3'
miRNA:   3'- -CUGCguUUGCGGCCCUGuCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 54373 0.75 0.311246
Target:  5'- uGCGCGAGCugcugcggcgggcgGCCGcGGGC-GAGGCGGGc -3'
miRNA:   3'- cUGCGUUUG--------------CGGC-CCUGuCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 130873 0.74 0.342557
Target:  5'- cGGCGCcccucaAGGCcgaaGCgGGGACuGAGGCGGGg -3'
miRNA:   3'- -CUGCG------UUUG----CGgCCCUGuCUCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.