Results 21 - 40 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6352 | 3' | -58.6 | NC_001847.1 | + | 45092 | 0.89 | 0.040207 |
Target: 5'- cGugGU--GCGCCGGGACGGGGGUGGGg -3' miRNA: 3'- -CugCGuuUGCGGCCCUGUCUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 45497 | 0.74 | 0.373667 |
Target: 5'- --aGCAAACGcCCGGGGCGGgcgccgccgccGGGCGGc -3' miRNA: 3'- cugCGUUUGC-GGCCCUGUC-----------UCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 130662 | 0.74 | 0.365713 |
Target: 5'- gGACGCcGGCGCCaGGGACgcgGGGGGCGc- -3' miRNA: 3'- -CUGCGuUUGCGG-CCCUG---UCUCCGCcc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 15785 | 0.75 | 0.30636 |
Target: 5'- cGGCgGCAAGCGCCGcGcGGCgGGAGGCGGcGg -3' miRNA: 3'- -CUG-CGUUUGCGGC-C-CUG-UCUCCGCC-C- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 131081 | 0.77 | 0.231622 |
Target: 5'- cGAgGCuGAgGCCGGGACuGGGGcCGGGa -3' miRNA: 3'- -CUgCGuUUgCGGCCCUGuCUCC-GCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 84456 | 0.73 | 0.423796 |
Target: 5'- uGCGCGGGggguggggaGCgGGGGgGGGGGCGGGg -3' miRNA: 3'- cUGCGUUUg--------CGgCCCUgUCUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 54545 | 0.73 | 0.415163 |
Target: 5'- gGGCGCAGACGgCGGGggcggcGCGGAGgacgacggccccGCGGGc -3' miRNA: 3'- -CUGCGUUUGCgGCCC------UGUCUC------------CGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 111257 | 0.8 | 0.164454 |
Target: 5'- gGAgGC-GGCGCCGGGuCGGAGGCGGc -3' miRNA: 3'- -CUgCGuUUGCGGCCCuGUCUCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 27208 | 0.74 | 0.342557 |
Target: 5'- gGACGgGcGCGCCGGGGCGcucGAGcuGCGGGu -3' miRNA: 3'- -CUGCgUuUGCGGCCCUGU---CUC--CGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 16927 | 0.74 | 0.332856 |
Target: 5'- cGGCGCAGACGCCGGucugcucagugcgcGACGG-GGCGa- -3' miRNA: 3'- -CUGCGUUUGCGGCC--------------CUGUCuCCGCcc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 51 | 0.8 | 0.156426 |
Target: 5'- cGGCGCGugcauuGCGgCGGG-CGGGGGCGGGg -3' miRNA: 3'- -CUGCGUu-----UGCgGCCCuGUCUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 130793 | 0.81 | 0.131053 |
Target: 5'- gGAgGCGGccGCgGCCGGGGCGGAGGCGGc -3' miRNA: 3'- -CUgCGUU--UG-CGGCCCUGUCUCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 102553 | 0.73 | 0.423796 |
Target: 5'- aGAUGCAGcACGaucccagcuCUGGGGCAGcGGCGGGc -3' miRNA: 3'- -CUGCGUU-UGC---------GGCCCUGUCuCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 42616 | 0.73 | 0.423796 |
Target: 5'- cGGCGC---CGCCGcGGAgGGGGGCGGc -3' miRNA: 3'- -CUGCGuuuGCGGC-CCUgUCUCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 102672 | 0.74 | 0.365713 |
Target: 5'- -cCGCGAGgGCgGGGGgGcGGGGCGGGg -3' miRNA: 3'- cuGCGUUUgCGgCCCUgU-CUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 135039 | 0.77 | 0.248736 |
Target: 5'- gGGCGCgGGGCGCCGGaccCAGGGGCGGa -3' miRNA: 3'- -CUGCG-UUUGCGGCCcu-GUCUCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 134902 | 0.77 | 0.237214 |
Target: 5'- gGGCGcCGGGCGUCGGGGCGcGAGGCccGGGc -3' miRNA: 3'- -CUGC-GUUUGCGGCCCUGU-CUCCG--CCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 54494 | 0.82 | 0.106735 |
Target: 5'- cGACGgcGGCGCCGGGGCcGGGGUGGGg -3' miRNA: 3'- -CUGCguUUGCGGCCCUGuCUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 54373 | 0.75 | 0.311246 |
Target: 5'- uGCGCGAGCugcugcggcgggcgGCCGcGGGC-GAGGCGGGc -3' miRNA: 3'- cUGCGUUUG--------------CGGC-CCUGuCUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 130873 | 0.74 | 0.342557 |
Target: 5'- cGGCGCcccucaAGGCcgaaGCgGGGACuGAGGCGGGg -3' miRNA: 3'- -CUGCG------UUUG----CGgCCCUGuCUCCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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