miRNA display CGI


Results 21 - 40 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 119433 0.66 0.789516
Target:  5'- cGAgGCAuaGACGCCGacGGCGGGGGCa-- -3'
miRNA:   3'- -CUgCGU--UUGCGGCc-CUGUCUCCGccc -5'
6352 3' -58.6 NC_001847.1 + 112121 0.66 0.815771
Target:  5'- cGGCGC-GugGCCGcGGCAGAGuCGGu -3'
miRNA:   3'- -CUGCGuUugCGGCcCUGUCUCcGCCc -5'
6352 3' -58.6 NC_001847.1 + 72199 0.66 0.815771
Target:  5'- -gUGCcuACuCCGGGucGCGGAGGCaGGGc -3'
miRNA:   3'- cuGCGuuUGcGGCCC--UGUCUCCG-CCC- -5'
6352 3' -58.6 NC_001847.1 + 1089 0.66 0.815771
Target:  5'- cACGcCGGGCGCCGcGGcCGcGGGCGGc -3'
miRNA:   3'- cUGC-GUUUGCGGC-CCuGUcUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 108744 0.66 0.814063
Target:  5'- cGACGCGAcggcguuccugccGCGCUGGGcgcCGGAcgcgccgGGCGGc -3'
miRNA:   3'- -CUGCGUU-------------UGCGGCCCu--GUCU-------CCGCCc -5'
6352 3' -58.6 NC_001847.1 + 3147 0.66 0.80717
Target:  5'- cGGCG---GCGCCGGcGGCGc-GGCGGGc -3'
miRNA:   3'- -CUGCguuUGCGGCC-CUGUcuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 2188 0.66 0.80717
Target:  5'- -cCGCGAgccGCGCCGcGACcucGGGGCGGc -3'
miRNA:   3'- cuGCGUU---UGCGGCcCUGu--CUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 71530 0.66 0.80717
Target:  5'- --aGCGGGCGaaGGGguaGCAGAGGCacgcggccacGGGg -3'
miRNA:   3'- cugCGUUUGCggCCC---UGUCUCCG----------CCC- -5'
6352 3' -58.6 NC_001847.1 + 11820 0.66 0.80717
Target:  5'- aGACgGCAcagcGCGCgGGGGgGGGGGCGc- -3'
miRNA:   3'- -CUG-CGUu---UGCGgCCCUgUCUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 66996 0.66 0.798415
Target:  5'- cGGCGC-GGCGCCGGaGA-AGGGGCa-- -3'
miRNA:   3'- -CUGCGuUUGCGGCC-CUgUCUCCGccc -5'
6352 3' -58.6 NC_001847.1 + 63941 0.66 0.798415
Target:  5'- aGCGCGGcCGCgGGGGCAGcagcgcgugccAGGCGu- -3'
miRNA:   3'- cUGCGUUuGCGgCCCUGUC-----------UCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 120902 0.66 0.798415
Target:  5'- aGCGUGAugGCuauauaggcauaCGaGGGCGG-GGCGGGc -3'
miRNA:   3'- cUGCGUUugCG------------GC-CCUGUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 58365 0.66 0.798415
Target:  5'- aGGCGCgGGACGUCGGccucguaGCGGGugccGGCGGGc -3'
miRNA:   3'- -CUGCG-UUUGCGGCCc------UGUCU----CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 57212 0.66 0.798415
Target:  5'- gGACGCcccggcCGCCGGGGCucgucgccgAGAGGUGc- -3'
miRNA:   3'- -CUGCGuuu---GCGGCCCUG---------UCUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 53751 0.66 0.798415
Target:  5'- aGCGCGGAU-CCGGcGGCccGAGGCGGc -3'
miRNA:   3'- cUGCGUUUGcGGCC-CUGu-CUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 35942 0.66 0.798415
Target:  5'- cGCGCuuGCGCCuGGGCGcugcuGGCGGc -3'
miRNA:   3'- cUGCGuuUGCGGcCCUGUcu---CCGCCc -5'
6352 3' -58.6 NC_001847.1 + 22579 0.66 0.798415
Target:  5'- --aGCGGGCGCCccGGGGCAGGGcccgcccggucGCGuGGc -3'
miRNA:   3'- cugCGUUUGCGG--CCCUGUCUC-----------CGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 2974 0.66 0.798415
Target:  5'- cGCGCAGcgcCGCCGGGGCc--GGCGcuGGa -3'
miRNA:   3'- cUGCGUUu--GCGGCCCUGucuCCGC--CC- -5'
6352 3' -58.6 NC_001847.1 + 58120 0.66 0.797532
Target:  5'- cGGCGCGgcggaugAGCGCCaGGACcuccuGgucgcuguccucGAGGCGGGc -3'
miRNA:   3'- -CUGCGU-------UUGCGGcCCUG-----U------------CUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 43559 0.66 0.789516
Target:  5'- -cCGCGAGCGCCGcgaGGAUggccGAGGCGu- -3'
miRNA:   3'- cuGCGUUUGCGGC---CCUGu---CUCCGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.