miRNA display CGI


Results 21 - 40 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 3915 0.66 0.78048
Target:  5'- uGGCGCGGACGCaCGcacagcgcuGGCAGcGGGCGGc -3'
miRNA:   3'- -CUGCGUUUGCG-GCc--------CUGUC-UCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 3936 0.72 0.441379
Target:  5'- cGCGCuGGCGCCGcGGCGGGGG-GGGc -3'
miRNA:   3'- cUGCGuUUGCGGCcCUGUCUCCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 3973 0.67 0.752634
Target:  5'- cGGCGaGGGCGCCGGGggccgggcgcGCGGccccGCGGGg -3'
miRNA:   3'- -CUGCgUUUGCGGCCC----------UGUCuc--CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 4801 0.69 0.634366
Target:  5'- -gUGCGGugGCCuGGGGgAGAcgggguaggggGGCGGGu -3'
miRNA:   3'- cuGCGUUugCGG-CCCUgUCU-----------CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 4855 0.66 0.78048
Target:  5'- aAUGUAuGGCGCCGGGACGGGcacagccacGCGGa -3'
miRNA:   3'- cUGCGU-UUGCGGCCCUGUCUc--------CGCCc -5'
6352 3' -58.6 NC_001847.1 + 4857 0.67 0.733543
Target:  5'- aACGCAGGgGa-GGGGgGGGGGCGGcGg -3'
miRNA:   3'- cUGCGUUUgCggCCCUgUCUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 4964 0.67 0.723865
Target:  5'- -uCGCGcGCGCCGGGGgGGcAGcUGGGg -3'
miRNA:   3'- cuGCGUuUGCGGCCCUgUC-UCcGCCC- -5'
6352 3' -58.6 NC_001847.1 + 5047 0.7 0.534856
Target:  5'- cGGCgGCGGcucCGaCGGGACGGAcGGCGGGc -3'
miRNA:   3'- -CUG-CGUUu--GCgGCCCUGUCU-CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 5188 0.67 0.723865
Target:  5'- cGGCGCGGGagaagcccuCGCCGGcucucucgccgcGGCGGccGGCGGGg -3'
miRNA:   3'- -CUGCGUUU---------GCGGCC------------CUGUCu-CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 6122 0.74 0.349391
Target:  5'- cGGCGCGAGCGCCucgccgccaucggGGGGCucGGuGGCGGu -3'
miRNA:   3'- -CUGCGUUUGCGG-------------CCCUG--UCuCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 6367 0.66 0.771315
Target:  5'- gGGCGUAGcCGCUGcGGcaGCAGAaGGCGGc -3'
miRNA:   3'- -CUGCGUUuGCGGC-CC--UGUCU-CCGCCc -5'
6352 3' -58.6 NC_001847.1 + 7593 0.69 0.594193
Target:  5'- gGGCGCGgcuggauuGAUGCgGGGugGGGuGGgGGGg -3'
miRNA:   3'- -CUGCGU--------UUGCGgCCCugUCU-CCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 7728 0.77 0.242918
Target:  5'- aGGCGCAgGGCGCgGGcGCGGAGGCGGcGg -3'
miRNA:   3'- -CUGCGU-UUGCGgCCcUGUCUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 7859 0.66 0.80717
Target:  5'- -cCGguGGCGCCu--GCAGAGGCGGc -3'
miRNA:   3'- cuGCguUUGCGGcccUGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 8117 0.85 0.072159
Target:  5'- aGCGCAGGCGCgGGGcccCAGGGGCGGGc -3'
miRNA:   3'- cUGCGUUUGCGgCCCu--GUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 8394 0.66 0.789516
Target:  5'- cGAUGgGGcUGCCGGGAUAGcGGGaGGGc -3'
miRNA:   3'- -CUGCgUUuGCGGCCCUGUC-UCCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 8444 0.8 0.164454
Target:  5'- gGAgGC-GGCGCCGGGuCGGAGGCGGc -3'
miRNA:   3'- -CUgCGuUUGCGGCCCuGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 8467 0.72 0.441379
Target:  5'- nGCGCc-GgGCCGGGGgcggcgcucggcCGGGGGCGGGg -3'
miRNA:   3'- cUGCGuuUgCGGCCCU------------GUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 8605 0.69 0.604213
Target:  5'- aGGgGC-GGCGCUcGGcCGGGGGCGGGg -3'
miRNA:   3'- -CUgCGuUUGCGGcCCuGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 8617 0.67 0.743135
Target:  5'- aGCGCAAGCcccGCCGGGGgAGcGGCcgcugcggacucGGGc -3'
miRNA:   3'- cUGCGUUUG---CGGCCCUgUCuCCG------------CCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.