Results 21 - 40 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6352 | 3' | -58.6 | NC_001847.1 | + | 3915 | 0.66 | 0.78048 |
Target: 5'- uGGCGCGGACGCaCGcacagcgcuGGCAGcGGGCGGc -3' miRNA: 3'- -CUGCGUUUGCG-GCc--------CUGUC-UCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 3936 | 0.72 | 0.441379 |
Target: 5'- cGCGCuGGCGCCGcGGCGGGGG-GGGc -3' miRNA: 3'- cUGCGuUUGCGGCcCUGUCUCCgCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 3973 | 0.67 | 0.752634 |
Target: 5'- cGGCGaGGGCGCCGGGggccgggcgcGCGGccccGCGGGg -3' miRNA: 3'- -CUGCgUUUGCGGCCC----------UGUCuc--CGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 4801 | 0.69 | 0.634366 |
Target: 5'- -gUGCGGugGCCuGGGGgAGAcgggguaggggGGCGGGu -3' miRNA: 3'- cuGCGUUugCGG-CCCUgUCU-----------CCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 4855 | 0.66 | 0.78048 |
Target: 5'- aAUGUAuGGCGCCGGGACGGGcacagccacGCGGa -3' miRNA: 3'- cUGCGU-UUGCGGCCCUGUCUc--------CGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 4857 | 0.67 | 0.733543 |
Target: 5'- aACGCAGGgGa-GGGGgGGGGGCGGcGg -3' miRNA: 3'- cUGCGUUUgCggCCCUgUCUCCGCC-C- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 4964 | 0.67 | 0.723865 |
Target: 5'- -uCGCGcGCGCCGGGGgGGcAGcUGGGg -3' miRNA: 3'- cuGCGUuUGCGGCCCUgUC-UCcGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 5047 | 0.7 | 0.534856 |
Target: 5'- cGGCgGCGGcucCGaCGGGACGGAcGGCGGGc -3' miRNA: 3'- -CUG-CGUUu--GCgGCCCUGUCU-CCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 5188 | 0.67 | 0.723865 |
Target: 5'- cGGCGCGGGagaagcccuCGCCGGcucucucgccgcGGCGGccGGCGGGg -3' miRNA: 3'- -CUGCGUUU---------GCGGCC------------CUGUCu-CCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 6122 | 0.74 | 0.349391 |
Target: 5'- cGGCGCGAGCGCCucgccgccaucggGGGGCucGGuGGCGGu -3' miRNA: 3'- -CUGCGUUUGCGG-------------CCCUG--UCuCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 6367 | 0.66 | 0.771315 |
Target: 5'- gGGCGUAGcCGCUGcGGcaGCAGAaGGCGGc -3' miRNA: 3'- -CUGCGUUuGCGGC-CC--UGUCU-CCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 7593 | 0.69 | 0.594193 |
Target: 5'- gGGCGCGgcuggauuGAUGCgGGGugGGGuGGgGGGg -3' miRNA: 3'- -CUGCGU--------UUGCGgCCCugUCU-CCgCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 7728 | 0.77 | 0.242918 |
Target: 5'- aGGCGCAgGGCGCgGGcGCGGAGGCGGcGg -3' miRNA: 3'- -CUGCGU-UUGCGgCCcUGUCUCCGCC-C- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 7859 | 0.66 | 0.80717 |
Target: 5'- -cCGguGGCGCCu--GCAGAGGCGGc -3' miRNA: 3'- cuGCguUUGCGGcccUGUCUCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 8117 | 0.85 | 0.072159 |
Target: 5'- aGCGCAGGCGCgGGGcccCAGGGGCGGGc -3' miRNA: 3'- cUGCGUUUGCGgCCCu--GUCUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 8394 | 0.66 | 0.789516 |
Target: 5'- cGAUGgGGcUGCCGGGAUAGcGGGaGGGc -3' miRNA: 3'- -CUGCgUUuGCGGCCCUGUC-UCCgCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 8444 | 0.8 | 0.164454 |
Target: 5'- gGAgGC-GGCGCCGGGuCGGAGGCGGc -3' miRNA: 3'- -CUgCGuUUGCGGCCCuGUCUCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 8467 | 0.72 | 0.441379 |
Target: 5'- nGCGCc-GgGCCGGGGgcggcgcucggcCGGGGGCGGGg -3' miRNA: 3'- cUGCGuuUgCGGCCCU------------GUCUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 8605 | 0.69 | 0.604213 |
Target: 5'- aGGgGC-GGCGCUcGGcCGGGGGCGGGg -3' miRNA: 3'- -CUgCGuUUGCGGcCCuGUCUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 8617 | 0.67 | 0.743135 |
Target: 5'- aGCGCAAGCcccGCCGGGGgAGcGGCcgcugcggacucGGGc -3' miRNA: 3'- cUGCGUUUG---CGGCCCUgUCuCCG------------CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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