miRNA display CGI


Results 41 - 60 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 8979 0.67 0.76203
Target:  5'- gGGC-CGGGgGCgGGcaGACGGGGGUGGGg -3'
miRNA:   3'- -CUGcGUUUgCGgCC--CUGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 9721 0.68 0.69441
Target:  5'- cGCGCGgguccuccggcGGCGCCGGGGCAGucGCcgucGGu -3'
miRNA:   3'- cUGCGU-----------UUGCGGCCCUGUCucCGc---CC- -5'
6352 3' -58.6 NC_001847.1 + 10069 0.67 0.727746
Target:  5'- cGCGCGGgcccagcgccccgccGCGCgCGGGAgcacaAGcGGCGGGg -3'
miRNA:   3'- cUGCGUU---------------UGCG-GCCCUg----UCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 10704 0.7 0.568282
Target:  5'- gGGCGCGGcccGCGCCGGccaagcGCcgccagcgaguuuagGGGGGCGGGg -3'
miRNA:   3'- -CUGCGUU---UGCGGCCc-----UG---------------UCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 10851 0.67 0.714111
Target:  5'- cGGCGC-GugGCCGaGGcGCGGcGGGCGcGGg -3'
miRNA:   3'- -CUGCGuUugCGGC-CC-UGUC-UCCGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 11230 0.74 0.357875
Target:  5'- -uCGCGGGCGgaCGGGGgGGAGGgGGGa -3'
miRNA:   3'- cuGCGUUUGCg-GCCCUgUCUCCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 11310 0.68 0.68448
Target:  5'- gGGCGCGccCGCCGaGGcCGGcGGGCGGc -3'
miRNA:   3'- -CUGCGUuuGCGGC-CCuGUC-UCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 11820 0.66 0.80717
Target:  5'- aGACgGCAcagcGCGCgGGGGgGGGGGCGc- -3'
miRNA:   3'- -CUG-CGUu---UGCGgCCCUgUCUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 11945 0.67 0.723865
Target:  5'- aGACGCcauGGACGCCgcuaGGGAU--GGGCGGc -3'
miRNA:   3'- -CUGCG---UUUGCGG----CCCUGucUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 12064 0.72 0.468507
Target:  5'- -cUGCGGACGCCGaGGccGCGGAGcgccGCGGGu -3'
miRNA:   3'- cuGCGUUUGCGGC-CC--UGUCUC----CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 12326 0.66 0.788618
Target:  5'- gGGCGCGccCGCCGgcucgcuGGugAGcGGUGGGc -3'
miRNA:   3'- -CUGCGUuuGCGGC-------CCugUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 12935 0.67 0.733543
Target:  5'- cGCGCGugucgucguGCGgUGGGGCGGcGGGcCGGGg -3'
miRNA:   3'- cUGCGUu--------UGCgGCCCUGUC-UCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 13093 0.68 0.698369
Target:  5'- uGCGCAAcugccauuuuuugucGCgGCCGGGGCGcgcGGGCGGc -3'
miRNA:   3'- cUGCGUU---------------UG-CGGCCCUGUc--UCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 13303 0.71 0.525152
Target:  5'- uACGCGGGCGCCGGGcuGCAGucGGCc-- -3'
miRNA:   3'- cUGCGUUUGCGGCCC--UGUCu-CCGccc -5'
6352 3' -58.6 NC_001847.1 + 13537 0.74 0.357875
Target:  5'- cGGCaGCAAccgcCGCCGGGGCGGcgcGGUGGGu -3'
miRNA:   3'- -CUG-CGUUu---GCGGCCCUGUCu--CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 13699 0.7 0.564319
Target:  5'- cACGCuGAGCGCCGGGACGu--GCGGc -3'
miRNA:   3'- cUGCG-UUUGCGGCCCUGUcucCGCCc -5'
6352 3' -58.6 NC_001847.1 + 14154 0.71 0.525152
Target:  5'- uGCGCAGcgGCgGCCGGGGCGGccgcgcuaaAGGCacGGGa -3'
miRNA:   3'- cUGCGUU--UG-CGGCCCUGUC---------UCCG--CCC- -5'
6352 3' -58.6 NC_001847.1 + 15084 0.69 0.594193
Target:  5'- --gGCAGGaGCCGGGGCuaggagcaaaGGGGGCGGu -3'
miRNA:   3'- cugCGUUUgCGGCCCUG----------UCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 15220 0.71 0.509769
Target:  5'- cGGCGCGuauagacgaaguacGCGCCGGcGGCGGcGGCGGc -3'
miRNA:   3'- -CUGCGUu-------------UGCGGCC-CUGUCuCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 15296 0.75 0.305667
Target:  5'- cGACGCugaccggcacGGCGUCGGGggccgcgggcguaGCGGGGGCGGGc -3'
miRNA:   3'- -CUGCGu---------UUGCGGCCC-------------UGUCUCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.