miRNA display CGI


Results 41 - 60 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 128053 0.69 0.624307
Target:  5'- cAUGCAAGCaCaCGGGAUAGuGGGCuGGGg -3'
miRNA:   3'- cUGCGUUUGcG-GCCCUGUC-UCCG-CCC- -5'
6352 3' -58.6 NC_001847.1 + 127331 0.72 0.467589
Target:  5'- cGGCGCcgAGGCgGCCGGcugccgcGGCAGGGGCGGcGg -3'
miRNA:   3'- -CUGCG--UUUG-CGGCC-------CUGUCUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 127201 0.67 0.714111
Target:  5'- uGGCGCGAACuCCGGcGCGGcgcGcGCGGGa -3'
miRNA:   3'- -CUGCGUUUGcGGCCcUGUCu--C-CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 127138 0.67 0.76203
Target:  5'- -uUGCccGCGCgGGGGCgauguccaaguGGAGGgGGGg -3'
miRNA:   3'- cuGCGuuUGCGgCCCUG-----------UCUCCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 126609 1.09 0.001541
Target:  5'- cGACGCAAACGCCGGGACAGAGGCGGGc -3'
miRNA:   3'- -CUGCGUUUGCGGCCCUGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 126238 0.68 0.69441
Target:  5'- cGGCG-GGGCGuCCGGGGuCGucGGCGGGg -3'
miRNA:   3'- -CUGCgUUUGC-GGCCCU-GUcuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 125497 0.69 0.624307
Target:  5'- gGACGCccggcugcucGAGCGgCGGGccggcGCGGcGGCGGGc -3'
miRNA:   3'- -CUGCG----------UUUGCgGCCC-----UGUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 125442 0.71 0.48706
Target:  5'- cGCGCAGggcGCGuCCGGGGa--GGGCGGGc -3'
miRNA:   3'- cUGCGUU---UGC-GGCCCUgucUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 125392 0.66 0.798415
Target:  5'- --aGCGGGCGCCccGGGGCAGGGcccgcccggucGCGuGGc -3'
miRNA:   3'- cugCGUUUGCGG--CCCUGUCUC-----------CGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 125328 0.78 0.21551
Target:  5'- cGGCgGCGGGCcgggccggucuGCCGGGACaaaGGGGGCGGGa -3'
miRNA:   3'- -CUG-CGUUUG-----------CGGCCCUG---UCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 125257 0.67 0.743135
Target:  5'- cACGCG---GUCGGGcgagcgGCAGAGGCGGc -3'
miRNA:   3'- cUGCGUuugCGGCCC------UGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 125205 0.72 0.463012
Target:  5'- aGGCGCccGgGCCGcGGcgagcgugcucguccGCGGGGGCGGGg -3'
miRNA:   3'- -CUGCGuuUgCGGC-CC---------------UGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 124968 0.66 0.771315
Target:  5'- cGCGCAAAaGCCGGcGCAGcGGGCcGGc -3'
miRNA:   3'- cUGCGUUUgCGGCCcUGUC-UCCGcCC- -5'
6352 3' -58.6 NC_001847.1 + 124723 0.69 0.614254
Target:  5'- aGACgGCcGAgGCCGcGGGC-GAGGCGGa -3'
miRNA:   3'- -CUG-CGuUUgCGGC-CCUGuCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 124698 0.72 0.450324
Target:  5'- aACGCGGccaggggaGCCGGGcGCGGGGGCGGc -3'
miRNA:   3'- cUGCGUUug------CGGCCC-UGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 124581 0.68 0.70429
Target:  5'- -cCGCcGGCGCCGGGcccggcgccgGCcGGGcGCGGGu -3'
miRNA:   3'- cuGCGuUUGCGGCCC----------UGuCUC-CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 124371 0.7 0.534856
Target:  5'- uAUGaCAAGgGCCGGGG-AGAgGGCGGGa -3'
miRNA:   3'- cUGC-GUUUgCGGCCCUgUCU-CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 123620 0.66 0.788618
Target:  5'- aGGCgGCAAACucgGCCGGGGCGGcgcccuuggcugaAGGCGc- -3'
miRNA:   3'- -CUG-CGUUUG---CGGCCCUGUC-------------UCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 123500 0.71 0.48706
Target:  5'- -cCGCAAGCgggGCCGGGGcCAGGGcugccGCGGGc -3'
miRNA:   3'- cuGCGUUUG---CGGCCCU-GUCUC-----CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 123118 0.71 0.525152
Target:  5'- aGCGCuc-CGCCGGG-CAGAGGggcgcuggaaCGGGu -3'
miRNA:   3'- cUGCGuuuGCGGCCCuGUCUCC----------GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.