miRNA display CGI


Results 41 - 60 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 51571 0.75 0.327717
Target:  5'- aGCGCuuccgcGGCGCCGGGGCAGccGuCGGGa -3'
miRNA:   3'- cUGCGu-----UUGCGGCCCUGUCucC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 16927 0.74 0.332856
Target:  5'- cGGCGCAGACGCCGGucugcucagugcgcGACGG-GGCGa- -3'
miRNA:   3'- -CUGCGUUUGCGGCC--------------CUGUCuCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 103019 0.74 0.335077
Target:  5'- cGGCGCccAGCGCCGGcGGC--GGGCGGGc -3'
miRNA:   3'- -CUGCGu-UUGCGGCC-CUGucUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 70691 0.74 0.335077
Target:  5'- cGCGC---CGCCGcGGGCGGcGGCGGGg -3'
miRNA:   3'- cUGCGuuuGCGGC-CCUGUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 28060 0.74 0.342557
Target:  5'- cGGCGCcccucaAGGCcgaaGCgGGGACuGAGGCGGGg -3'
miRNA:   3'- -CUGCG------UUUG----CGgCCCUGuCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 130873 0.74 0.342557
Target:  5'- cGGCGCcccucaAGGCcgaaGCgGGGACuGAGGCGGGg -3'
miRNA:   3'- -CUGCG------UUUG----CGgCCCUGuCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 98878 0.74 0.342557
Target:  5'- gGGCGCGuGCGCCuGGGCGGcccAGGcCGGGa -3'
miRNA:   3'- -CUGCGUuUGCGGcCCUGUC---UCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 27208 0.74 0.342557
Target:  5'- gGACGgGcGCGCCGGGGCGcucGAGcuGCGGGu -3'
miRNA:   3'- -CUGCgUuUGCGGCCCUGU---CUC--CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 74138 0.74 0.342557
Target:  5'- uGCGCGuGGCGCCGGGGCGaauGAuGGCGGc -3'
miRNA:   3'- cUGCGU-UUGCGGCCCUGU---CU-CCGCCc -5'
6352 3' -58.6 NC_001847.1 + 6122 0.74 0.349391
Target:  5'- cGGCGCGAGCGCCucgccgccaucggGGGGCucGGuGGCGGu -3'
miRNA:   3'- -CUGCGUUUGCGG-------------CCCUG--UCuCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 13537 0.74 0.357875
Target:  5'- cGGCaGCAAccgcCGCCGGGGCGGcgcGGUGGGu -3'
miRNA:   3'- -CUG-CGUUu---GCGGCCCUGUCu--CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 27849 0.74 0.357875
Target:  5'- gGACGCcGGCGCCaGGGACgcgGGGGGCGccgaGGa -3'
miRNA:   3'- -CUGCGuUUGCGG-CCCUG---UCUCCGC----CC- -5'
6352 3' -58.6 NC_001847.1 + 114043 0.74 0.357875
Target:  5'- -uCGCGGGCGgaCGGGGgGGAGGgGGGa -3'
miRNA:   3'- cuGCGUUUGCg-GCCCUgUCUCCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 11230 0.74 0.357875
Target:  5'- -uCGCGGGCGgaCGGGGgGGAGGgGGGa -3'
miRNA:   3'- cuGCGUUUGCg-GCCCUgUCUCCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 74445 0.74 0.364923
Target:  5'- cGGCGCAcGACGCCGuGGcgcugcaguacgaGCGGGGGCuGGGc -3'
miRNA:   3'- -CUGCGU-UUGCGGC-CC-------------UGUCUCCG-CCC- -5'
6352 3' -58.6 NC_001847.1 + 51514 0.74 0.365713
Target:  5'- cGCGCcggugcGGCGCCGGcaGGCGGGGGCGGc -3'
miRNA:   3'- cUGCGu-----UUGCGGCC--CUGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 102672 0.74 0.365713
Target:  5'- -cCGCGAGgGCgGGGGgGcGGGGCGGGg -3'
miRNA:   3'- cuGCGUUUgCGgCCCUgU-CUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 130662 0.74 0.365713
Target:  5'- gGACGCcGGCGCCaGGGACgcgGGGGGCGc- -3'
miRNA:   3'- -CUGCGuUUGCGG-CCCUG---UCUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 42952 0.74 0.365713
Target:  5'- cGACGCc-GCGCgCGGG--GGGGGCGGGc -3'
miRNA:   3'- -CUGCGuuUGCG-GCCCugUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 134207 0.74 0.373667
Target:  5'- cGGCGCGcGCggGCCGaGGGCGGcGGUGGGa -3'
miRNA:   3'- -CUGCGUuUG--CGGC-CCUGUCuCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.