miRNA display CGI


Results 41 - 60 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 2604 0.66 0.797532
Target:  5'- cACGCGAgcccgccGCGCCGGaGguGcuucGGCGGGa -3'
miRNA:   3'- cUGCGUU-------UGCGGCCcUguCu---CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 70472 0.66 0.790412
Target:  5'- cGCGCGGGCGCCcgguGGAUGGcgugcuggugacgacGGCGGGc -3'
miRNA:   3'- cUGCGUUUGCGGc---CCUGUCu--------------CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 30475 0.66 0.789516
Target:  5'- -cUGC-AGCGCUGGGACGcGAucGGCGcGGc -3'
miRNA:   3'- cuGCGuUUGCGGCCCUGU-CU--CCGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 86997 0.66 0.789516
Target:  5'- cACGUGGugGCUGaGGACGGcGGCuGGc -3'
miRNA:   3'- cUGCGUUugCGGC-CCUGUCuCCGcCC- -5'
6352 3' -58.6 NC_001847.1 + 111207 0.66 0.789516
Target:  5'- cGAUGgGGcUGCCGGGAUAGcGGGaGGGc -3'
miRNA:   3'- -CUGCgUUuGCGGCCCUGUC-UCCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 59323 0.66 0.789516
Target:  5'- cGGCGCcggcGGCGCCGuaccagcccGGcauCGGGGGCGGa -3'
miRNA:   3'- -CUGCGu---UUGCGGC---------CCu--GUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 119433 0.66 0.789516
Target:  5'- cGAgGCAuaGACGCCGacGGCGGGGGCa-- -3'
miRNA:   3'- -CUgCGU--UUGCGGCc-CUGUCUCCGccc -5'
6352 3' -58.6 NC_001847.1 + 43559 0.66 0.789516
Target:  5'- -cCGCGAGCGCCGcgaGGAUggccGAGGCGu- -3'
miRNA:   3'- cuGCGUUUGCGGC---CCUGu---CUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 33437 0.66 0.789516
Target:  5'- gGGCGCucGGCGUCGcGGGCgucgcuGGAGGCGa- -3'
miRNA:   3'- -CUGCGu-UUGCGGC-CCUG------UCUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 8394 0.66 0.789516
Target:  5'- cGAUGgGGcUGCCGGGAUAGcGGGaGGGc -3'
miRNA:   3'- -CUGCgUUuGCGGCCCUGUC-UCCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 86462 0.66 0.789516
Target:  5'- gGACGCcgacGGCGCCGacggcggcacGGACGacGAGGCugcGGGg -3'
miRNA:   3'- -CUGCGu---UUGCGGC----------CCUGU--CUCCG---CCC- -5'
6352 3' -58.6 NC_001847.1 + 12326 0.66 0.788618
Target:  5'- gGGCGCGccCGCCGgcucgcuGGugAGcGGUGGGc -3'
miRNA:   3'- -CUGCGUuuGCGGC-------CCugUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 123620 0.66 0.788618
Target:  5'- aGGCgGCAAACucgGCCGGGGCGGcgcccuuggcugaAGGCGc- -3'
miRNA:   3'- -CUG-CGUUUG---CGGCCCUGUC-------------UCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 29875 0.66 0.78048
Target:  5'- gGACGgGGACG--GGGACGgcGAGGCGGcGg -3'
miRNA:   3'- -CUGCgUUUGCggCCCUGU--CUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 132688 0.66 0.78048
Target:  5'- gGACGgGGACG--GGGACGgcGAGGCGGcGg -3'
miRNA:   3'- -CUGCgUUUGCggCCCUGU--CUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 27783 0.66 0.78048
Target:  5'- gGACGacGGCGCCGGaGACgcGGGGGCcaccgaGGGc -3'
miRNA:   3'- -CUGCguUUGCGGCC-CUG--UCUCCG------CCC- -5'
6352 3' -58.6 NC_001847.1 + 119209 0.66 0.78048
Target:  5'- -uCGUcgGCGCCGcGGccaccGCGGGgcGGCGGGg -3'
miRNA:   3'- cuGCGuuUGCGGC-CC-----UGUCU--CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 119149 0.66 0.78048
Target:  5'- -uCGUcgGCGCCGcGGccgccGCGGGgcGGCGGGg -3'
miRNA:   3'- cuGCGuuUGCGGC-CC-----UGUCU--CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 26630 0.66 0.78048
Target:  5'- aGGCGCAccugAACuGCCGGGuCuG-GGCGGc -3'
miRNA:   3'- -CUGCGU----UUG-CGGCCCuGuCuCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 34089 0.66 0.78048
Target:  5'- cGugGCGGcCGCCGuGGcucgcGCGGcGGCGGa -3'
miRNA:   3'- -CugCGUUuGCGGC-CC-----UGUCuCCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.