Results 21 - 40 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6352 | 3' | -58.6 | NC_001847.1 | + | 71530 | 0.66 | 0.80717 |
Target: 5'- --aGCGGGCGaaGGGguaGCAGAGGCacgcggccacGGGg -3' miRNA: 3'- cugCGUUUGCggCCC---UGUCUCCG----------CCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 63941 | 0.66 | 0.798415 |
Target: 5'- aGCGCGGcCGCgGGGGCAGcagcgcgugccAGGCGu- -3' miRNA: 3'- cUGCGUUuGCGgCCCUGUC-----------UCCGCcc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 64227 | 0.66 | 0.798415 |
Target: 5'- cGCGCuagAGAUGgCGGGGgAGGccacGGCGGGc -3' miRNA: 3'- cUGCG---UUUGCgGCCCUgUCU----CCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 83160 | 0.66 | 0.798415 |
Target: 5'- cGGCGaccucccAACGCCcgacGGGcugGCGGAcGGCGGGg -3' miRNA: 3'- -CUGCgu-----UUGCGG----CCC---UGUCU-CCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 66996 | 0.66 | 0.798415 |
Target: 5'- cGGCGC-GGCGCCGGaGA-AGGGGCa-- -3' miRNA: 3'- -CUGCGuUUGCGGCC-CUgUCUCCGccc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 2974 | 0.66 | 0.798415 |
Target: 5'- cGCGCAGcgcCGCCGGGGCc--GGCGcuGGa -3' miRNA: 3'- cUGCGUUu--GCGGCCCUGucuCCGC--CC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 43791 | 0.66 | 0.798415 |
Target: 5'- gGACGCGcGCGCCGGcGCGccggucgagggcGAcGGCGGc -3' miRNA: 3'- -CUGCGUuUGCGGCCcUGU------------CU-CCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 52787 | 0.66 | 0.798415 |
Target: 5'- -gUGUAGcGCGgCGGcGACAuGGGCGGGg -3' miRNA: 3'- cuGCGUU-UGCgGCC-CUGUcUCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 68096 | 0.66 | 0.798415 |
Target: 5'- cGGCGCGAGCGgUGGuGACgaugacuucgguGGucGCGGGc -3' miRNA: 3'- -CUGCGUUUGCgGCC-CUG------------UCucCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 54818 | 0.66 | 0.798415 |
Target: 5'- --gGCGAGCGCgGGcACGGuGGUGGa -3' miRNA: 3'- cugCGUUUGCGgCCcUGUCuCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 22579 | 0.66 | 0.798415 |
Target: 5'- --aGCGGGCGCCccGGGGCAGGGcccgcccggucGCGuGGc -3' miRNA: 3'- cugCGUUUGCGG--CCCUGUCUC-----------CGC-CC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 53751 | 0.66 | 0.798415 |
Target: 5'- aGCGCGGAU-CCGGcGGCccGAGGCGGc -3' miRNA: 3'- cUGCGUUUGcGGCC-CUGu-CUCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 57212 | 0.66 | 0.798415 |
Target: 5'- gGACGCcccggcCGCCGGGGCucgucgccgAGAGGUGc- -3' miRNA: 3'- -CUGCGuuu---GCGGCCCUG---------UCUCCGCcc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 58365 | 0.66 | 0.798415 |
Target: 5'- aGGCGCgGGACGUCGGccucguaGCGGGugccGGCGGGc -3' miRNA: 3'- -CUGCG-UUUGCGGCCc------UGUCU----CCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 120902 | 0.66 | 0.798415 |
Target: 5'- aGCGUGAugGCuauauaggcauaCGaGGGCGG-GGCGGGc -3' miRNA: 3'- cUGCGUUugCG------------GC-CCUGUCuCCGCCC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 35942 | 0.66 | 0.798415 |
Target: 5'- cGCGCuuGCGCCuGGGCGcugcuGGCGGc -3' miRNA: 3'- cUGCGuuUGCGGcCCUGUcu---CCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 92164 | 0.66 | 0.798415 |
Target: 5'- cGACaGCGAAC-CCGGGcCGGccGGCGGc -3' miRNA: 3'- -CUG-CGUUUGcGGCCCuGUCu-CCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 125392 | 0.66 | 0.798415 |
Target: 5'- --aGCGGGCGCCccGGGGCAGGGcccgcccggucGCGuGGc -3' miRNA: 3'- cugCGUUUGCGG--CCCUGUCUC-----------CGC-CC- -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 85125 | 0.66 | 0.798415 |
Target: 5'- cGGCGC--GC-CCGGGGCccAGcAGGCGGu -3' miRNA: 3'- -CUGCGuuUGcGGCCCUG--UC-UCCGCCc -5' |
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6352 | 3' | -58.6 | NC_001847.1 | + | 2604 | 0.66 | 0.797532 |
Target: 5'- cACGCGAgcccgccGCGCCGGaGguGcuucGGCGGGa -3' miRNA: 3'- cUGCGUU-------UGCGGCCcUguCu---CCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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