miRNA display CGI


Results 21 - 40 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 55367 0.77 0.220771
Target:  5'- -cCGCGGGCGCCGGaGACGGucGGCGaGGa -3'
miRNA:   3'- cuGCGUUUGCGGCC-CUGUCu-CCGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 130695 0.77 0.226141
Target:  5'- gGACGCGGacgucgcggaguGCGCCgaggccgagGGGGCGGAGGCGcGGa -3'
miRNA:   3'- -CUGCGUU------------UGCGG---------CCCUGUCUCCGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 28268 0.77 0.231622
Target:  5'- cGAgGCuGAgGCCGGGACuGGGGcCGGGa -3'
miRNA:   3'- -CUgCGuUUgCGGCCCUGuCUCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 131081 0.77 0.231622
Target:  5'- cGAgGCuGAgGCCGGGACuGGGGcCGGGa -3'
miRNA:   3'- -CUgCGuUUgCGGCCCUGuCUCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 32089 0.77 0.237214
Target:  5'- gGGCGcCGGGCGUCGGGGCGcGAGGCccGGGc -3'
miRNA:   3'- -CUGC-GUUUGCGGCCCUGU-CUCCG--CCC- -5'
6352 3' -58.6 NC_001847.1 + 134902 0.77 0.237214
Target:  5'- gGGCGcCGGGCGUCGGGGCGcGAGGCccGGGc -3'
miRNA:   3'- -CUGC-GUUUGCGGCCCUGU-CUCCG--CCC- -5'
6352 3' -58.6 NC_001847.1 + 7728 0.77 0.242918
Target:  5'- aGGCGCAgGGCGCgGGcGCGGAGGCGGcGg -3'
miRNA:   3'- -CUGCGU-UUGCGgCCcUGUCUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 135039 0.77 0.248736
Target:  5'- gGGCGCgGGGCGCCGGaccCAGGGGCGGa -3'
miRNA:   3'- -CUGCG-UUUGCGGCCcu-GUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 32226 0.77 0.248736
Target:  5'- gGGCGCgGGGCGCCGGaccCAGGGGCGGa -3'
miRNA:   3'- -CUGCG-UUUGCGGCCcu-GUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 101081 0.76 0.260718
Target:  5'- -cCGCGGGgGCCGGGuCGGcgGGGCGGGc -3'
miRNA:   3'- cuGCGUUUgCGGCCCuGUC--UCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 32973 0.76 0.273165
Target:  5'- gGAgGCcagAGGCGCCGGGGCGGgcaGGGCGGc -3'
miRNA:   3'- -CUgCG---UUUGCGGCCCUGUC---UCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 31809 0.76 0.286085
Target:  5'- cGugGCGgugggcGGCGCgGGGGCAGAGuGCGaGGa -3'
miRNA:   3'- -CugCGU------UUGCGgCCCUGUCUC-CGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 132397 0.76 0.286085
Target:  5'- cGGCGCcgccGCGCCGGGcCGGGGGCcGGu -3'
miRNA:   3'- -CUGCGuu--UGCGGCCCuGUCUCCGcCC- -5'
6352 3' -58.6 NC_001847.1 + 29584 0.76 0.286085
Target:  5'- cGGCGCcgccGCGCCGGGcCGGGGGCcGGu -3'
miRNA:   3'- -CUGCGuu--UGCGGCCCuGUCUCCGcCC- -5'
6352 3' -58.6 NC_001847.1 + 33541 0.75 0.292724
Target:  5'- gGGCGCGGGCGCCGaagaGGcggcagacgccGCGGAGGCGGc -3'
miRNA:   3'- -CUGCGUUUGCGGC----CC-----------UGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 15296 0.75 0.305667
Target:  5'- cGACGCugaccggcacGGCGUCGGGggccgcgggcguaGCGGGGGCGGGc -3'
miRNA:   3'- -CUGCGu---------UUGCGGCCC-------------UGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 15785 0.75 0.30636
Target:  5'- cGGCgGCAAGCGCCGcGcGGCgGGAGGCGGcGg -3'
miRNA:   3'- -CUG-CGUUUGCGGC-C-CUG-UCUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 54373 0.75 0.311246
Target:  5'- uGCGCGAGCugcugcggcgggcgGCCGcGGGC-GAGGCGGGc -3'
miRNA:   3'- cUGCGUUUG--------------CGGC-CCUGuCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 73154 0.75 0.313359
Target:  5'- gGAgGCGGcGCGCCGGGcggaGGAGGCGGa -3'
miRNA:   3'- -CUgCGUU-UGCGGCCCug--UCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 105227 0.75 0.320478
Target:  5'- -cCGCGGGCGCgCGGG-CAcAGGCGGGc -3'
miRNA:   3'- cuGCGUUUGCG-GCCCuGUcUCCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.