miRNA display CGI


Results 61 - 80 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 29875 0.66 0.78048
Target:  5'- gGACGgGGACG--GGGACGgcGAGGCGGcGg -3'
miRNA:   3'- -CUGCgUUUGCggCCCUGU--CUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 116541 0.66 0.78048
Target:  5'- cGCGCcGACGCCGcGGACGGcgcgcuaauGGCGc- -3'
miRNA:   3'- cUGCGuUUGCGGC-CCUGUCu--------CCGCcc -5'
6352 3' -58.6 NC_001847.1 + 119149 0.66 0.78048
Target:  5'- -uCGUcgGCGCCGcGGccgccGCGGGgcGGCGGGg -3'
miRNA:   3'- cuGCGuuUGCGGC-CC-----UGUCU--CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 26630 0.66 0.78048
Target:  5'- aGGCGCAccugAACuGCCGGGuCuG-GGCGGc -3'
miRNA:   3'- -CUGCGU----UUG-CGGCCCuGuCuCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 130596 0.66 0.78048
Target:  5'- gGACGacGGCGCCGGaGACgcGGGGGCcaccgaGGGc -3'
miRNA:   3'- -CUGCguUUGCGGCC-CUG--UCUCCG------CCC- -5'
6352 3' -58.6 NC_001847.1 + 132688 0.66 0.78048
Target:  5'- gGACGgGGACG--GGGACGgcGAGGCGGcGg -3'
miRNA:   3'- -CUGCgUUUGCggCCCUGU--CUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 99590 0.66 0.78048
Target:  5'- cGCGCAcgccaagcuuGGCGCgGGGcuGCAGuccGGCGGa -3'
miRNA:   3'- cUGCGU----------UUGCGgCCC--UGUCu--CCGCCc -5'
6352 3' -58.6 NC_001847.1 + 119209 0.66 0.78048
Target:  5'- -uCGUcgGCGCCGcGGccaccGCGGGgcGGCGGGg -3'
miRNA:   3'- cuGCGuuUGCGGC-CC-----UGUCU--CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 103771 0.66 0.78048
Target:  5'- gGACGacuGCGCCGGcaccCGGccGGCGGGg -3'
miRNA:   3'- -CUGCguuUGCGGCCcu--GUCu-CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 64164 0.66 0.771315
Target:  5'- cAUGCAGGcCGCuugCGcGGACGGGgcGGCGGGc -3'
miRNA:   3'- cUGCGUUU-GCG---GC-CCUGUCU--CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 133968 0.66 0.771315
Target:  5'- aGCGagauaAGGCGCCGGGGCuGGGaGCGc- -3'
miRNA:   3'- cUGCg----UUUGCGGCCCUGuCUC-CGCcc -5'
6352 3' -58.6 NC_001847.1 + 124968 0.66 0.771315
Target:  5'- cGCGCAAAaGCCGGcGCAGcGGGCcGGc -3'
miRNA:   3'- cUGCGUUUgCGGCCcUGUC-UCCGcCC- -5'
6352 3' -58.6 NC_001847.1 + 22155 0.66 0.771315
Target:  5'- cGCGCAAAaGCCGGcGCAGcGGGCcGGc -3'
miRNA:   3'- cUGCGUUUgCGGCCcUGUC-UCCGcCC- -5'
6352 3' -58.6 NC_001847.1 + 129127 0.66 0.771315
Target:  5'- -uCGCGAAagggaGaaGGGugAGGGGCGGc -3'
miRNA:   3'- cuGCGUUUg----CggCCCugUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 75934 0.66 0.771315
Target:  5'- -gUGCAAGCGCaCGGcGCGGAcGGCucGGGc -3'
miRNA:   3'- cuGCGUUUGCG-GCCcUGUCU-CCG--CCC- -5'
6352 3' -58.6 NC_001847.1 + 6367 0.66 0.771315
Target:  5'- gGGCGUAGcCGCUGcGGcaGCAGAaGGCGGc -3'
miRNA:   3'- -CUGCGUUuGCGGC-CC--UGUCU-CCGCCc -5'
6352 3' -58.6 NC_001847.1 + 35467 0.66 0.771315
Target:  5'- cGGCGCGAgagGCGCUagaGGcGGCAaAGGCGGc -3'
miRNA:   3'- -CUGCGUU---UGCGG---CC-CUGUcUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 48052 0.66 0.771315
Target:  5'- aGCGCGAguccgcgcGCGCCGcGAa--AGGCGGGg -3'
miRNA:   3'- cUGCGUU--------UGCGGCcCUgucUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 26314 0.66 0.771315
Target:  5'- -uCGCGAAagggaGaaGGGugAGGGGCGGc -3'
miRNA:   3'- cuGCGUUUg----CggCCCugUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 53828 0.66 0.771315
Target:  5'- gGGCGCGGcUGgCGGcGGCAGcGGCGGc -3'
miRNA:   3'- -CUGCGUUuGCgGCC-CUGUCuCCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.