miRNA display CGI


Results 61 - 80 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 83235 0.73 0.42033
Target:  5'- uGACGCc-GCgGCCGGGGCGGcggccgaaagcgcGGCGGGg -3'
miRNA:   3'- -CUGCGuuUG-CGGCCCUGUCu------------CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 106783 0.72 0.432536
Target:  5'- cGGCGCGAggGCGCCGGGggcccgggcgcGCGGccccGCGGGg -3'
miRNA:   3'- -CUGCGUU--UGCGGCCC-----------UGUCuc--CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 130793 0.81 0.131053
Target:  5'- gGAgGCGGccGCgGCCGGGGCGGAGGCGGc -3'
miRNA:   3'- -CUgCGUU--UG-CGGCCCUGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 111257 0.8 0.164454
Target:  5'- gGAgGC-GGCGCCGGGuCGGAGGCGGc -3'
miRNA:   3'- -CUgCGuUUGCGGCCCuGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 131081 0.77 0.231622
Target:  5'- cGAgGCuGAgGCCGGGACuGGGGcCGGGa -3'
miRNA:   3'- -CUgCGuUUgCGGCCCUGuCUCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 135039 0.77 0.248736
Target:  5'- gGGCGCgGGGCGCCGGaccCAGGGGCGGa -3'
miRNA:   3'- -CUGCG-UUUGCGGCCcu-GUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 15785 0.75 0.30636
Target:  5'- cGGCgGCAAGCGCCGcGcGGCgGGAGGCGGcGg -3'
miRNA:   3'- -CUG-CGUUUGCGGC-C-CUG-UCUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 74138 0.74 0.342557
Target:  5'- uGCGCGuGGCGCCGGGGCGaauGAuGGCGGc -3'
miRNA:   3'- cUGCGU-UUGCGGCCCUGU---CU-CCGCCc -5'
6352 3' -58.6 NC_001847.1 + 114043 0.74 0.357875
Target:  5'- -uCGCGGGCGgaCGGGGgGGAGGgGGGa -3'
miRNA:   3'- cuGCGUUUGCg-GCCCUgUCUCCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 45497 0.74 0.373667
Target:  5'- --aGCAAACGcCCGGGGCGGgcgccgccgccGGGCGGc -3'
miRNA:   3'- cugCGUUUGC-GGCCCUGUC-----------UCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 28859 0.7 0.554445
Target:  5'- cGCGCGcgcGACGCCGGcGGCGcuGGGGCGa- -3'
miRNA:   3'- cUGCGU---UUGCGGCC-CUGU--CUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 59546 0.7 0.544622
Target:  5'- --gGCAGGCGgUGGGggcgGCGGGGGCGGu -3'
miRNA:   3'- cugCGUUUGCgGCCC----UGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 106749 0.72 0.441379
Target:  5'- cGCGCuGGCGCCGcGGCGGGGG-GGGc -3'
miRNA:   3'- cUGCGuUUGCGGCcCUGUCUCCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 75637 0.72 0.450324
Target:  5'- cGACGgcGAUGCCGGaGcCGGAGGCGcGGg -3'
miRNA:   3'- -CUGCguUUGCGGCC-CuGUCUCCGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 12064 0.72 0.468507
Target:  5'- -cUGCGGACGCCGaGGccGCGGAGcgccGCGGGu -3'
miRNA:   3'- cuGCGUUUGCGGC-CC--UGUCUC----CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 106055 0.72 0.477739
Target:  5'- cGCGCcgugcuCGCCGGcGGCAGGGGCGccGGc -3'
miRNA:   3'- cUGCGuuu---GCGGCC-CUGUCUCCGC--CC- -5'
6352 3' -58.6 NC_001847.1 + 122143 0.71 0.496466
Target:  5'- cGGCGCGcagGGCGCCgcgcGGGAC-GAGGagaGGGa -3'
miRNA:   3'- -CUGCGU---UUGCGG----CCCUGuCUCCg--CCC- -5'
6352 3' -58.6 NC_001847.1 + 43074 0.71 0.505953
Target:  5'- aACGCGGGCGCugcuggcuCGGcGGCGGAGGCGcccGGa -3'
miRNA:   3'- cUGCGUUUGCG--------GCC-CUGUCUCCGC---CC- -5'
6352 3' -58.6 NC_001847.1 + 105356 0.71 0.525152
Target:  5'- cGGCGCucccgcCGCCGGGcCGG-GGCGGc -3'
miRNA:   3'- -CUGCGuuu---GCGGCCCuGUCuCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 106614 0.71 0.525152
Target:  5'- aGCGCAcGCgGCCGGG-CGGcGGCGGc -3'
miRNA:   3'- cUGCGUuUG-CGGCCCuGUCuCCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.