miRNA display CGI


Results 41 - 60 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 104960 0.73 0.415163
Target:  5'- --gGCGAGCGCCGGGcgcCAGGGcuCGGGg -3'
miRNA:   3'- cugCGUUUGCGGCCCu--GUCUCc-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 31809 0.76 0.286085
Target:  5'- cGugGCGgugggcGGCGCgGGGGCAGAGuGCGaGGa -3'
miRNA:   3'- -CugCGU------UUGCGgCCCUGUCUC-CGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 30435 0.84 0.080156
Target:  5'- gGGCGCGgaGGCGCCGGGGCugcacGAGGUGGGc -3'
miRNA:   3'- -CUGCGU--UUGCGGCCCUGu----CUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 54545 0.73 0.415163
Target:  5'- gGGCGCAGACGgCGGGggcggcGCGGAGgacgacggccccGCGGGc -3'
miRNA:   3'- -CUGCGUUUGCgGCCC------UGUCUC------------CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 8117 0.85 0.072159
Target:  5'- aGCGCAGGCGCgGGGcccCAGGGGCGGGc -3'
miRNA:   3'- cUGCGUUUGCGgCCCu--GUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 106055 0.72 0.477739
Target:  5'- cGCGCcgugcuCGCCGGcGGCAGGGGCGccGGc -3'
miRNA:   3'- cUGCGuuu---GCGGCC-CUGUCUCCGC--CC- -5'
6352 3' -58.6 NC_001847.1 + 54494 0.82 0.106735
Target:  5'- cGACGgcGGCGCCGGGGCcGGGGUGGGg -3'
miRNA:   3'- -CUGCguUUGCGGCCCUGuCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 12064 0.72 0.468507
Target:  5'- -cUGCGGACGCCGaGGccGCGGAGcgccGCGGGu -3'
miRNA:   3'- cuGCGUUUGCGGC-CC--UGUCUC----CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 97031 0.72 0.459368
Target:  5'- cGGCGCAccCGCCGGG-CAGcGGCGuccGGg -3'
miRNA:   3'- -CUGCGUuuGCGGCCCuGUCuCCGC---CC- -5'
6352 3' -58.6 NC_001847.1 + 111280 0.72 0.441379
Target:  5'- nGCGCc-GgGCCGGGGgcggcgcucggcCGGGGGCGGGg -3'
miRNA:   3'- cUGCGuuUgCGGCCCU------------GUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 132792 0.72 0.441379
Target:  5'- cGACGCG---GCCGGGcCGGcgcGGCGGGa -3'
miRNA:   3'- -CUGCGUuugCGGCCCuGUCu--CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 69445 0.73 0.423796
Target:  5'- gGugGCGGACGgCGGcgcgcgcgcGGCGGcGGCGGGg -3'
miRNA:   3'- -CugCGUUUGCgGCC---------CUGUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 83235 0.73 0.42033
Target:  5'- uGACGCc-GCgGCCGGGGCGGcggccgaaagcgcGGCGGGg -3'
miRNA:   3'- -CUGCGuuUG-CGGCCCUGUCu------------CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 130662 0.74 0.365713
Target:  5'- gGACGCcGGCGCCaGGGACgcgGGGGGCGc- -3'
miRNA:   3'- -CUGCGuUUGCGG-CCCUG---UCUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 6122 0.74 0.349391
Target:  5'- cGGCGCGAGCGCCucgccgccaucggGGGGCucGGuGGCGGu -3'
miRNA:   3'- -CUGCGUUUGCGG-------------CCCUG--UCuCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 16927 0.74 0.332856
Target:  5'- cGGCGCAGACGCCGGucugcucagugcgcGACGG-GGCGa- -3'
miRNA:   3'- -CUGCGUUUGCGGCC--------------CUGUCuCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 33541 0.75 0.292724
Target:  5'- gGGCGCGGGCGCCGaagaGGcggcagacgccGCGGAGGCGGc -3'
miRNA:   3'- -CUGCGUUUGCGGC----CC-----------UGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 7728 0.77 0.242918
Target:  5'- aGGCGCAgGGCGCgGGcGCGGAGGCGGcGg -3'
miRNA:   3'- -CUGCGU-UUGCGgCCcUGUCUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 130695 0.77 0.226141
Target:  5'- gGACGCGGacgucgcggaguGCGCCgaggccgagGGGGCGGAGGCGcGGa -3'
miRNA:   3'- -CUGCGUU------------UGCGG---------CCCUGUCUCCGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 101145 0.8 0.160395
Target:  5'- gGGCGCGGGgGCUGGGGCcGGGGcCGGGg -3'
miRNA:   3'- -CUGCGUUUgCGGCCCUGuCUCC-GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.