miRNA display CGI


Results 41 - 60 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 51 0.8 0.156426
Target:  5'- cGGCGCGugcauuGCGgCGGG-CGGGGGCGGGg -3'
miRNA:   3'- -CUGCGUu-----UGCgGCCCuGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 102553 0.73 0.423796
Target:  5'- aGAUGCAGcACGaucccagcuCUGGGGCAGcGGCGGGc -3'
miRNA:   3'- -CUGCGUU-UGC---------GGCCCUGUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 125442 0.71 0.48706
Target:  5'- cGCGCAGggcGCGuCCGGGGa--GGGCGGGc -3'
miRNA:   3'- cUGCGUU---UGC-GGCCCUgucUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 102772 0.72 0.468507
Target:  5'- cGACGCccgcGACGCCGGcGccccccgcGCGGGGGCuGGGc -3'
miRNA:   3'- -CUGCGu---UUGCGGCC-C--------UGUCUCCG-CCC- -5'
6352 3' -58.6 NC_001847.1 + 42616 0.73 0.423796
Target:  5'- cGGCGC---CGCCGcGGAgGGGGGCGGc -3'
miRNA:   3'- -CUGCGuuuGCGGC-CCUgUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 135039 0.77 0.248736
Target:  5'- gGGCGCgGGGCGCCGGaccCAGGGGCGGa -3'
miRNA:   3'- -CUGCG-UUUGCGGCCcu-GUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 130793 0.81 0.131053
Target:  5'- gGAgGCGGccGCgGCCGGGGCGGAGGCGGc -3'
miRNA:   3'- -CUgCGUU--UG-CGGCCCUGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 54494 0.82 0.106735
Target:  5'- cGACGgcGGCGCCGGGGCcGGGGUGGGg -3'
miRNA:   3'- -CUGCguUUGCGGCCCUGuCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 54373 0.75 0.311246
Target:  5'- uGCGCGAGCugcugcggcgggcgGCCGcGGGC-GAGGCGGGc -3'
miRNA:   3'- cUGCGUUUG--------------CGGC-CCUGuCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 45497 0.74 0.373667
Target:  5'- --aGCAAACGcCCGGGGCGGgcgccgccgccGGGCGGc -3'
miRNA:   3'- cugCGUUUGC-GGCCCUGUC-----------UCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 102672 0.74 0.365713
Target:  5'- -cCGCGAGgGCgGGGGgGcGGGGCGGGg -3'
miRNA:   3'- cuGCGUUUgCGgCCCUgU-CUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 33541 0.75 0.292724
Target:  5'- gGGCGCGGGCGCCGaagaGGcggcagacgccGCGGAGGCGGc -3'
miRNA:   3'- -CUGCGUUUGCGGC----CC-----------UGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 125328 0.78 0.21551
Target:  5'- cGGCgGCGGGCcgggccggucuGCCGGGACaaaGGGGGCGGGa -3'
miRNA:   3'- -CUG-CGUUUG-----------CGGCCCUG---UCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 129253 0.72 0.450324
Target:  5'- aGAC-CAAcGCGCgCGaGGCAGGGGCGGGa -3'
miRNA:   3'- -CUGcGUU-UGCG-GCcCUGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 106749 0.72 0.441379
Target:  5'- cGCGCuGGCGCCGcGGCGGGGG-GGGc -3'
miRNA:   3'- cUGCGuUUGCGGCcCUGUCUCCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 83235 0.73 0.42033
Target:  5'- uGACGCc-GCgGCCGGGGCGGcggccgaaagcgcGGCGGGg -3'
miRNA:   3'- -CUGCGuuUG-CGGCCCUGUCu------------CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 134986 0.72 0.463012
Target:  5'- aGACGCAGAaccccggccccccgGCCGGGGCccgaGGcccgcGGGCGGGg -3'
miRNA:   3'- -CUGCGUUUg-------------CGGCCCUG----UC-----UCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 19263 0.66 0.815771
Target:  5'- cGGCGCGAGcCGgCGGcGCAGcgucugugcGGCGGGc -3'
miRNA:   3'- -CUGCGUUU-GCgGCCcUGUCu--------CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 56876 0.71 0.496466
Target:  5'- gGGCGCGGccacgggccCGCCGGcGACGGcgacgccggcGGGCGGGu -3'
miRNA:   3'- -CUGCGUUu--------GCGGCC-CUGUC----------UCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 97031 0.72 0.459368
Target:  5'- cGGCGCAccCGCCGGG-CAGcGGCGuccGGg -3'
miRNA:   3'- -CUGCGUuuGCGGCCCuGUCuCCGC---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.