miRNA display CGI


Results 61 - 80 of 468 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 119433 0.66 0.789516
Target:  5'- cGAgGCAuaGACGCCGacGGCGGGGGCa-- -3'
miRNA:   3'- -CUgCGU--UUGCGGCc-CUGUCUCCGccc -5'
6352 3' -58.6 NC_001847.1 + 43559 0.66 0.789516
Target:  5'- -cCGCGAGCGCCGcgaGGAUggccGAGGCGu- -3'
miRNA:   3'- cuGCGUUUGCGGC---CCUGu---CUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 22155 0.66 0.771315
Target:  5'- cGCGCAAAaGCCGGcGCAGcGGGCcGGc -3'
miRNA:   3'- cUGCGUUUgCGGCCcUGUC-UCCGcCC- -5'
6352 3' -58.6 NC_001847.1 + 133968 0.66 0.771315
Target:  5'- aGCGagauaAGGCGCCGGGGCuGGGaGCGc- -3'
miRNA:   3'- cUGCg----UUUGCGGCCCUGuCUC-CGCcc -5'
6352 3' -58.6 NC_001847.1 + 75934 0.66 0.771315
Target:  5'- -gUGCAAGCGCaCGGcGCGGAcGGCucGGGc -3'
miRNA:   3'- cuGCGUUUGCG-GCCcUGUCU-CCG--CCC- -5'
6352 3' -58.6 NC_001847.1 + 48052 0.66 0.771315
Target:  5'- aGCGCGAguccgcgcGCGCCGcGAa--AGGCGGGg -3'
miRNA:   3'- cUGCGUU--------UGCGGCcCUgucUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 26314 0.66 0.771315
Target:  5'- -uCGCGAAagggaGaaGGGugAGGGGCGGc -3'
miRNA:   3'- cuGCGUUUg----CggCCCugUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 130183 0.66 0.768541
Target:  5'- -cCGCGGGCGCCcggccugaagagacGGGcggcGCGGAGggcGCGGGa -3'
miRNA:   3'- cuGCGUUUGCGG--------------CCC----UGUCUC---CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 56365 0.66 0.768541
Target:  5'- gGGCGCGggcggcacgaccucGGCGCuCGGGuCGGGGaggucggccggcGCGGGg -3'
miRNA:   3'- -CUGCGU--------------UUGCG-GCCCuGUCUC------------CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 129127 0.66 0.771315
Target:  5'- -uCGCGAAagggaGaaGGGugAGGGGCGGc -3'
miRNA:   3'- cuGCGUUUg----CggCCCugUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 26630 0.66 0.78048
Target:  5'- aGGCGCAccugAACuGCCGGGuCuG-GGCGGc -3'
miRNA:   3'- -CUGCGU----UUG-CGGCCCuGuCuCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 119149 0.66 0.78048
Target:  5'- -uCGUcgGCGCCGcGGccgccGCGGGgcGGCGGGg -3'
miRNA:   3'- cuGCGuuUGCGGC-CC-----UGUCU--CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 8394 0.66 0.789516
Target:  5'- cGAUGgGGcUGCCGGGAUAGcGGGaGGGc -3'
miRNA:   3'- -CUGCgUUuGCGGCCCUGUC-UCCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 86462 0.66 0.789516
Target:  5'- gGACGCcgacGGCGCCGacggcggcacGGACGacGAGGCugcGGGg -3'
miRNA:   3'- -CUGCGu---UUGCGGC----------CCUGU--CUCCG---CCC- -5'
6352 3' -58.6 NC_001847.1 + 12326 0.66 0.788618
Target:  5'- gGGCGCGccCGCCGgcucgcuGGugAGcGGUGGGc -3'
miRNA:   3'- -CUGCGUuuGCGGC-------CCugUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 123620 0.66 0.788618
Target:  5'- aGGCgGCAAACucgGCCGGGGCGGcgcccuuggcugaAGGCGc- -3'
miRNA:   3'- -CUG-CGUUUG---CGGCCCUGUC-------------UCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 116541 0.66 0.78048
Target:  5'- cGCGCcGACGCCGcGGACGGcgcgcuaauGGCGc- -3'
miRNA:   3'- cUGCGuUUGCGGC-CCUGUCu--------CCGCcc -5'
6352 3' -58.6 NC_001847.1 + 29875 0.66 0.78048
Target:  5'- gGACGgGGACG--GGGACGgcGAGGCGGcGg -3'
miRNA:   3'- -CUGCgUUUGCggCCCUGU--CUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 27783 0.66 0.78048
Target:  5'- gGACGacGGCGCCGGaGACgcGGGGGCcaccgaGGGc -3'
miRNA:   3'- -CUGCguUUGCGGCC-CUG--UCUCCG------CCC- -5'
6352 3' -58.6 NC_001847.1 + 119209 0.66 0.78048
Target:  5'- -uCGUcgGCGCCGcGGccaccGCGGGgcGGCGGGg -3'
miRNA:   3'- cuGCGuuUGCGGC-CC-----UGUCU--CCGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.