miRNA display CGI


Results 61 - 80 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 45497 0.74 0.373667
Target:  5'- --aGCAAACGcCCGGGGCGGgcgccgccgccGGGCGGc -3'
miRNA:   3'- cugCGUUUGC-GGCCCUGUC-----------UCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 38958 0.74 0.373667
Target:  5'- -cCGCGAGCGCCauGGcGGCGGccgcGGCGGGg -3'
miRNA:   3'- cuGCGUUUGCGG--CC-CUGUCu---CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 118902 0.73 0.381739
Target:  5'- cGGgGCcGGgGCCGGGGCcGAGGcCGGGa -3'
miRNA:   3'- -CUgCGuUUgCGGCCCUGuCUCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 15383 0.73 0.389925
Target:  5'- cGGgGCGgucGGCGUCGGGGCuGGGGcCGGGu -3'
miRNA:   3'- -CUgCGU---UUGCGGCCCUGuCUCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 79565 0.73 0.397391
Target:  5'- -uCGCGgggGGCGCCGGGcucGCGGccucuucGGGCGGGg -3'
miRNA:   3'- cuGCGU---UUGCGGCCC---UGUC-------UCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 96371 0.73 0.398226
Target:  5'- gGugGCAAugGCgGGGccggcgGCGGcaauGGCGGGg -3'
miRNA:   3'- -CugCGUUugCGgCCC------UGUCu---CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 24411 0.73 0.40664
Target:  5'- cGugGCGGcCGCCGuGGACAGA-GCGGc -3'
miRNA:   3'- -CugCGUUuGCGGC-CCUGUCUcCGCCc -5'
6352 3' -58.6 NC_001847.1 + 27882 0.73 0.407487
Target:  5'- nGACGCGGACGUCGcGGAgugcgccgaggccgaGGGGGCGGa -3'
miRNA:   3'- -CUGCGUUUGCGGC-CCUg--------------UCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 2147 0.73 0.415163
Target:  5'- --gGCGAGCGCCGGGcgcCAGGGcuCGGGg -3'
miRNA:   3'- cugCGUUUGCGGCCCu--GUCUCc-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 134800 0.73 0.415163
Target:  5'- gGGCGCgAAGC-CCGGGAgGGAcGCGGGc -3'
miRNA:   3'- -CUGCG-UUUGcGGCCCUgUCUcCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 104960 0.73 0.415163
Target:  5'- --gGCGAGCGCCGGGcgcCAGGGcuCGGGg -3'
miRNA:   3'- cugCGUUUGCGGCCCu--GUCUCc-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 96623 0.73 0.415163
Target:  5'- uGCGCGuGCGCgGGGGCc--GGCGGGu -3'
miRNA:   3'- cUGCGUuUGCGgCCCUGucuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 54545 0.73 0.415163
Target:  5'- gGGCGCAGACGgCGGGggcggcGCGGAGgacgacggccccGCGGGc -3'
miRNA:   3'- -CUGCGUUUGCgGCCC------UGUCUC------------CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 31987 0.73 0.415163
Target:  5'- gGGCGCgAAGC-CCGGGAgGGAcGCGGGc -3'
miRNA:   3'- -CUGCG-UUUGcGGCCCUgUCUcCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 83235 0.73 0.42033
Target:  5'- uGACGCc-GCgGCCGGGGCGGcggccgaaagcgcGGCGGGg -3'
miRNA:   3'- -CUGCGuuUG-CGGCCCUGUCu------------CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 84456 0.73 0.423796
Target:  5'- uGCGCGGGggguggggaGCgGGGGgGGGGGCGGGg -3'
miRNA:   3'- cUGCGUUUg--------CGgCCCUgUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 42616 0.73 0.423796
Target:  5'- cGGCGC---CGCCGcGGAgGGGGGCGGc -3'
miRNA:   3'- -CUGCGuuuGCGGC-CCUgUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 102553 0.73 0.423796
Target:  5'- aGAUGCAGcACGaucccagcuCUGGGGCAGcGGCGGGc -3'
miRNA:   3'- -CUGCGUU-UGC---------GGCCCUGUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 69445 0.73 0.423796
Target:  5'- gGugGCGGACGgCGGcgcgcgcgcGGCGGcGGCGGGg -3'
miRNA:   3'- -CugCGUUUGCgGCC---------CUGUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 106783 0.72 0.432536
Target:  5'- cGGCGCGAggGCGCCGGGggcccgggcgcGCGGccccGCGGGg -3'
miRNA:   3'- -CUGCGUU--UGCGGCCC-----------UGUCuc--CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.