miRNA display CGI


Results 61 - 80 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 15383 0.73 0.389925
Target:  5'- cGGgGCGgucGGCGUCGGGGCuGGGGcCGGGu -3'
miRNA:   3'- -CUgCGU---UUGCGGCCCUGuCUCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 15785 0.75 0.30636
Target:  5'- cGGCgGCAAGCGCCGcGcGGCgGGAGGCGGcGg -3'
miRNA:   3'- -CUG-CGUUUGCGGC-C-CUG-UCUCCGCC-C- -5'
6352 3' -58.6 NC_001847.1 + 16568 0.71 0.496466
Target:  5'- -uUGUAAACG-CGGGACAGcgGGGuCGGGg -3'
miRNA:   3'- cuGCGUUUGCgGCCCUGUC--UCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 16836 0.68 0.68448
Target:  5'- uGGCGCGGGCaUCGGGGCGgcgcucGAGGCGa- -3'
miRNA:   3'- -CUGCGUUUGcGGCCCUGU------CUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 16927 0.74 0.332856
Target:  5'- cGGCGCAGACGCCGGucugcucagugcgcGACGG-GGCGa- -3'
miRNA:   3'- -CUGCGUUUGCGGCC--------------CUGUCuCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 17866 0.68 0.701332
Target:  5'- aGCGC---CGCCGGGucgcccguccucggGCGG-GGCGGGc -3'
miRNA:   3'- cUGCGuuuGCGGCCC--------------UGUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 17997 0.72 0.477739
Target:  5'- uGGCGU-AGCGUCGGGGCuguuGGGcGUGGGg -3'
miRNA:   3'- -CUGCGuUUGCGGCCCUGu---CUC-CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 18328 0.68 0.68448
Target:  5'- cACGCGGAgcagcUGCCGGGcGCAGucGCGGu -3'
miRNA:   3'- cUGCGUUU-----GCGGCCC-UGUCucCGCCc -5'
6352 3' -58.6 NC_001847.1 + 19263 0.66 0.815771
Target:  5'- cGGCGCGAGcCGgCGGcGCAGcgucugugcGGCGGGc -3'
miRNA:   3'- -CUGCGUUU-GCgGCCcUGUCu--------CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 19781 0.69 0.634366
Target:  5'- cGGCGCAGucaucagcauCGUCGGcggaggcgguGGCGGuGGCGGGg -3'
miRNA:   3'- -CUGCGUUu---------GCGGCC----------CUGUCuCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 20508 0.66 0.815771
Target:  5'- cGCGCGu-CGUCGcGGGCGGGGGCccacuGGa -3'
miRNA:   3'- cUGCGUuuGCGGC-CCUGUCUCCGc----CC- -5'
6352 3' -58.6 NC_001847.1 + 20776 0.68 0.69441
Target:  5'- cGCGCAGAUGCgaGGGgggcuGCAGcaucgcGGCGGGu -3'
miRNA:   3'- cUGCGUUUGCGg-CCC-----UGUCu-----CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 21558 0.7 0.534856
Target:  5'- uAUGaCAAGgGCCGGGG-AGAgGGCGGGa -3'
miRNA:   3'- cUGC-GUUUgCGGCCCUgUCU-CCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 21768 0.68 0.70429
Target:  5'- -cCGCcGGCGCCGGGcccggcgccgGCcGGGcGCGGGu -3'
miRNA:   3'- cuGCGuUUGCGGCCC----------UGuCUC-CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 21910 0.69 0.614254
Target:  5'- aGACgGCcGAgGCCGcGGGC-GAGGCGGa -3'
miRNA:   3'- -CUG-CGuUUgCGGC-CCUGuCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 22155 0.66 0.771315
Target:  5'- cGCGCAAAaGCCGGcGCAGcGGGCcGGc -3'
miRNA:   3'- cUGCGUUUgCGGCCcUGUC-UCCGcCC- -5'
6352 3' -58.6 NC_001847.1 + 22392 0.72 0.463012
Target:  5'- aGGCGCccGgGCCGcGGcgagcgugcucguccGCGGGGGCGGGg -3'
miRNA:   3'- -CUGCGuuUgCGGC-CC---------------UGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 22444 0.67 0.743135
Target:  5'- cACGCG---GUCGGGcgagcgGCAGAGGCGGc -3'
miRNA:   3'- cUGCGUuugCGGCCC------UGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 22515 0.78 0.21551
Target:  5'- cGGCgGCGGGCcgggccggucuGCCGGGACaaaGGGGGCGGGa -3'
miRNA:   3'- -CUG-CGUUUG-----------CGGCCCUG---UCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 22579 0.66 0.798415
Target:  5'- --aGCGGGCGCCccGGGGCAGGGcccgcccggucGCGuGGc -3'
miRNA:   3'- cugCGUUUGCGG--CCCUGUCUC-----------CGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.