miRNA display CGI


Results 21 - 40 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 3' -58.6 NC_001847.1 + 131132 0.7 0.544622
Target:  5'- aGAgGCGGGCGCCGGGccCGGcgccccGCGGGg -3'
miRNA:   3'- -CUgCGUUUGCGGCCCu-GUCuc----CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 131081 0.77 0.231622
Target:  5'- cGAgGCuGAgGCCGGGACuGGGGcCGGGa -3'
miRNA:   3'- -CUgCGuUUgCGGCCCUGuCUCC-GCCC- -5'
6352 3' -58.6 NC_001847.1 + 131000 0.68 0.70429
Target:  5'- gGACuGCAgcGAUGCCGGGcccgaggacgAUGGGGGCGaGGc -3'
miRNA:   3'- -CUG-CGU--UUGCGGCCC----------UGUCUCCGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 130961 0.69 0.594193
Target:  5'- gGACuGCAgcGACGCCGGGuCcGAGgacaGCGGGc -3'
miRNA:   3'- -CUG-CGU--UUGCGGCCCuGuCUC----CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 130873 0.74 0.342557
Target:  5'- cGGCGCcccucaAGGCcgaaGCgGGGACuGAGGCGGGg -3'
miRNA:   3'- -CUGCG------UUUG----CGgCCCUGuCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 130793 0.81 0.131053
Target:  5'- gGAgGCGGccGCgGCCGGGGCGGAGGCGGc -3'
miRNA:   3'- -CUgCGUU--UG-CGGCCCUGUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 130695 0.77 0.226141
Target:  5'- gGACGCGGacgucgcggaguGCGCCgaggccgagGGGGCGGAGGCGcGGa -3'
miRNA:   3'- -CUGCGUU------------UGCGG---------CCCUGUCUCCGC-CC- -5'
6352 3' -58.6 NC_001847.1 + 130662 0.74 0.365713
Target:  5'- gGACGCcGGCGCCaGGGACgcgGGGGGCGc- -3'
miRNA:   3'- -CUGCGuUUGCGG-CCCUG---UCUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 130596 0.66 0.78048
Target:  5'- gGACGacGGCGCCGGaGACgcGGGGGCcaccgaGGGc -3'
miRNA:   3'- -CUGCguUUGCGGCC-CUG--UCUCCG------CCC- -5'
6352 3' -58.6 NC_001847.1 + 130491 0.7 0.554445
Target:  5'- cGACGCGGcGCGUCGGG-CuGAGGCGc- -3'
miRNA:   3'- -CUGCGUU-UGCGGCCCuGuCUCCGCcc -5'
6352 3' -58.6 NC_001847.1 + 130183 0.66 0.768541
Target:  5'- -cCGCGGGCGCCcggccugaagagacGGGcggcGCGGAGggcGCGGGa -3'
miRNA:   3'- cuGCGUUUGCGG--------------CCC----UGUCUC---CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 130001 0.68 0.674508
Target:  5'- cGCGCGGugG--GGGugGGGGGgGGGa -3'
miRNA:   3'- cUGCGUUugCggCCCugUCUCCgCCC- -5'
6352 3' -58.6 NC_001847.1 + 129443 0.66 0.78048
Target:  5'- aGGCGCAccugAACuGCCGGGuCuG-GGCGGc -3'
miRNA:   3'- -CUGCGU----UUG-CGGCCCuGuCuCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 129319 0.68 0.69441
Target:  5'- --gGCGGGCcuGCCGGGcGCGGGGcCGGGg -3'
miRNA:   3'- cugCGUUUG--CGGCCC-UGUCUCcGCCC- -5'
6352 3' -58.6 NC_001847.1 + 129253 0.72 0.450324
Target:  5'- aGAC-CAAcGCGCgCGaGGCAGGGGCGGGa -3'
miRNA:   3'- -CUGcGUU-UGCG-GCcCUGUCUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 129127 0.66 0.771315
Target:  5'- -uCGCGAAagggaGaaGGGugAGGGGCGGc -3'
miRNA:   3'- cuGCGUUUg----CggCCCugUCUCCGCCc -5'
6352 3' -58.6 NC_001847.1 + 129005 0.69 0.614254
Target:  5'- -uCGCucacCGCCGGGGuCcuGGGCGGGa -3'
miRNA:   3'- cuGCGuuu-GCGGCCCU-GucUCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 128919 0.67 0.743135
Target:  5'- --aGCAGugGCGCUGGG-CAGGaaGCGGGg -3'
miRNA:   3'- cugCGUU--UGCGGCCCuGUCUc-CGCCC- -5'
6352 3' -58.6 NC_001847.1 + 128786 0.67 0.743135
Target:  5'- -cCGCGGGCGgucagaCCaGGGCGGgcGGGCGGGc -3'
miRNA:   3'- cuGCGUUUGC------GGcCCUGUC--UCCGCCC- -5'
6352 3' -58.6 NC_001847.1 + 128690 0.68 0.653467
Target:  5'- -uCGCAAAUGCagcaaGGGaggaggaGCGGGGuGCGGGg -3'
miRNA:   3'- cuGCGUUUGCGg----CCC-------UGUCUC-CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.