Results 21 - 40 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6352 | 5' | -56 | NC_001847.1 | + | 66324 | 0.72 | 0.543385 |
Target: 5'- gGCCCUUUUgcGUCAuUGUUC-CCCCCg -3' miRNA: 3'- aCGGGAAGAaaCGGU-GCAAGcGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 131153 | 0.72 | 0.583988 |
Target: 5'- cGCCCcgCgggGCCGCGcgCccggGCCCCCg -3' miRNA: 3'- aCGGGaaGaaaCGGUGCaaG----CGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 127061 | 0.72 | 0.543385 |
Target: 5'- cGCCgaUCUc-GCCGCGgcggUGCCCCCc -3' miRNA: 3'- aCGGgaAGAaaCGGUGCaa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 5988 | 0.72 | 0.562574 |
Target: 5'- -cCCCUUCUucccugcUUGCuCACGgcCGCCCCUc -3' miRNA: 3'- acGGGAAGA-------AACG-GUGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 28340 | 0.72 | 0.583988 |
Target: 5'- cGCCCcgCgggGCCGCGcgCccggGCCCCCg -3' miRNA: 3'- aCGGGaaGaaaCGGUGCaaG----CGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 94753 | 0.71 | 0.645794 |
Target: 5'- gGCgCgUCUUgGCCGgGgccgUCGCCCCCc -3' miRNA: 3'- aCGgGaAGAAaCGGUgCa---AGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 90691 | 0.71 | 0.635473 |
Target: 5'- cUGUCUcgCgcgcgUGCCGCGcgccgCGCCCCCg -3' miRNA: 3'- -ACGGGaaGaa---ACGGUGCaa---GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 4353 | 0.71 | 0.604527 |
Target: 5'- cGCCCcg----GCCGCGgcCGCCUCCa -3' miRNA: 3'- aCGGGaagaaaCGGUGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 66928 | 0.71 | 0.62515 |
Target: 5'- gGCCCcgCcgcgGCC-CGUgCGCCCCCu -3' miRNA: 3'- aCGGGaaGaaa-CGGuGCAaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 28970 | 0.71 | 0.635473 |
Target: 5'- aGCCUgcg---GCgCGCGUaCGCCCCCa -3' miRNA: 3'- aCGGGaagaaaCG-GUGCAaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 1349 | 0.71 | 0.62515 |
Target: 5'- cGCCCUgcgCg--GCCAUGUccUUGCgCCCg -3' miRNA: 3'- aCGGGAa--GaaaCGGUGCA--AGCGgGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 103520 | 0.71 | 0.594243 |
Target: 5'- cGUCUUUa-UUGCCGcCGUcgCGCCCCCu -3' miRNA: 3'- aCGGGAAgaAACGGU-GCAa-GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 54090 | 0.71 | 0.614832 |
Target: 5'- gGCCCcgCccacGcCCACG-UCGCCCCCg -3' miRNA: 3'- aCGGGaaGaaa-C-GGUGCaAGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 115946 | 0.71 | 0.594243 |
Target: 5'- cGCCg-UCUggGCCACagacccCGCCCCCg -3' miRNA: 3'- aCGGgaAGAaaCGGUGcaa---GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 101571 | 0.71 | 0.594243 |
Target: 5'- aGCCCgg----GCCGCGccagaCGCCCCCc -3' miRNA: 3'- aCGGGaagaaaCGGUGCaa---GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 31373 | 0.71 | 0.614832 |
Target: 5'- gGCCCggg--UGCCgGCGcagUCGUCCCCg -3' miRNA: 3'- aCGGGaagaaACGG-UGCa--AGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 707 | 0.71 | 0.594243 |
Target: 5'- cGUCUUUa-UUGCCGcCGUcgCGCCCCCu -3' miRNA: 3'- aCGGGAAgaAACGGU-GCAa-GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 99961 | 0.71 | 0.594243 |
Target: 5'- cGCuCCUccUCgaagGCCGCGU--GCCCCCg -3' miRNA: 3'- aCG-GGA--AGaaa-CGGUGCAagCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 107166 | 0.71 | 0.604527 |
Target: 5'- cGCCCcg----GCCGCGgcCGCCUCCa -3' miRNA: 3'- aCGGGaagaaaCGGUGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 27338 | 0.71 | 0.614832 |
Target: 5'- cGCCgcgCUUUGCCGCGgcCGCcgcagCCCCa -3' miRNA: 3'- aCGGgaaGAAACGGUGCaaGCG-----GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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