miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 117917 0.66 0.930729
Target:  5'- gGUUGaCGCGGUguGGGgCaACGUAAGc -3'
miRNA:   3'- gUAAUgGCGCCAguCCCgG-UGCAUUU- -5'
6353 3' -54 NC_001847.1 + 134244 0.66 0.930729
Target:  5'- ---gGCgGCGGcCGGcGGCCGCGg--- -3'
miRNA:   3'- guaaUGgCGCCaGUC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 73861 0.66 0.930729
Target:  5'- ---cGCCGCGGUgCGcGGGgCGCGUc-- -3'
miRNA:   3'- guaaUGGCGCCA-GU-CCCgGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 31431 0.66 0.930729
Target:  5'- ---gGCgGCGGcCGGcGGCCGCGg--- -3'
miRNA:   3'- guaaUGgCGCCaGUC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 13109 0.66 0.930729
Target:  5'- -uUUGUCGCGGcCGGGGCgCGCGg--- -3'
miRNA:   3'- guAAUGGCGCCaGUCCCG-GUGCauuu -5'
6353 3' -54 NC_001847.1 + 59 0.66 0.925287
Target:  5'- gCAUUGCgGCGGgcgGGGGCgGgGUGGGg -3'
miRNA:   3'- -GUAAUGgCGCCag-UCCCGgUgCAUUU- -5'
6353 3' -54 NC_001847.1 + 34133 0.66 0.91959
Target:  5'- --cUGCCGCGGUgGccGCCGCGgcGAg -3'
miRNA:   3'- guaAUGGCGCCAgUccCGGUGCauUU- -5'
6353 3' -54 NC_001847.1 + 47857 0.66 0.91959
Target:  5'- ---gGCCGCGGcCGcGGGCCGuCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGU-CCCGGU-GCauuu -5'
6353 3' -54 NC_001847.1 + 44047 0.66 0.91959
Target:  5'- ---aGgCGCGcGUCGGGGCCGCc---- -3'
miRNA:   3'- guaaUgGCGC-CAGUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 85244 0.67 0.913638
Target:  5'- ---cACCGCGG-CcGGGCCcagcACGUAGc -3'
miRNA:   3'- guaaUGGCGCCaGuCCCGG----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 10386 0.67 0.907434
Target:  5'- ---cGCuCGCGG-CGGGGCCGCu---- -3'
miRNA:   3'- guaaUG-GCGCCaGUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 4911 0.67 0.907434
Target:  5'- ---cGCaCGCGGUCguuAGGGCCGCc---- -3'
miRNA:   3'- guaaUG-GCGCCAG---UCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 70689 0.67 0.907434
Target:  5'- ---gACCGCGGgccCGGGGCUggcCGUGGc -3'
miRNA:   3'- guaaUGGCGCCa--GUCCCGGu--GCAUUu -5'
6353 3' -54 NC_001847.1 + 135023 0.67 0.907434
Target:  5'- ----cCCGCGGgCGGGGCCGgGg--- -3'
miRNA:   3'- guaauGGCGCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 75517 0.67 0.907434
Target:  5'- ---gAgCGCGGUCGcGGGCgGCGUc-- -3'
miRNA:   3'- guaaUgGCGCCAGU-CCCGgUGCAuuu -5'
6353 3' -54 NC_001847.1 + 32210 0.67 0.907434
Target:  5'- ----cCCGCGGgCGGGGCCGgGg--- -3'
miRNA:   3'- guaauGGCGCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 13713 0.67 0.907434
Target:  5'- ---gGCgGCGGUC-GGGCCGCu---- -3'
miRNA:   3'- guaaUGgCGCCAGuCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 104448 0.67 0.900978
Target:  5'- ---cACCGCGGcgcgCAGGuaCACGUGc- -3'
miRNA:   3'- guaaUGGCGCCa---GUCCcgGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 120032 0.67 0.900978
Target:  5'- ---cGCCGCcGUCAGGGCCGu----- -3'
miRNA:   3'- guaaUGGCGcCAGUCCCGGUgcauuu -5'
6353 3' -54 NC_001847.1 + 98739 0.67 0.900978
Target:  5'- cCGggGCCGgGGcCGGGGCCGgGg--- -3'
miRNA:   3'- -GUaaUGGCgCCaGUCCCGGUgCauuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.