miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 5' -62.7 NC_001847.1 + 126041 1.09 0.000608
Target:  5'- gGGCCUGCGGUGGCUCCGAGAGCGGCAc -3'
miRNA:   3'- -CCGGACGCCACCGAGGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 54252 0.81 0.063451
Target:  5'- aGCgCUGCGGUGGCgcCCGAcGAGCGGCu -3'
miRNA:   3'- cCG-GACGCCACCGa-GGCU-CUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 96363 0.78 0.11172
Target:  5'- gGGCCgGCGGUGGCaauggcggggCCGGcGGCGGCAa -3'
miRNA:   3'- -CCGGaCGCCACCGa---------GGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 116671 0.77 0.123283
Target:  5'- uGGCCUGCGuGUGGgUCCGgcgcugcGGGcGCGGCAc -3'
miRNA:   3'- -CCGGACGC-CACCgAGGC-------UCU-CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 79398 0.75 0.173627
Target:  5'- cGGCCgcgcggGCGcgagccggaccaccGUGGCgcCCGAGGGCGGCGg -3'
miRNA:   3'- -CCGGa-----CGC--------------CACCGa-GGCUCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 32836 0.74 0.207122
Target:  5'- aGGCCcGC-GUGGCcgCCGAGAccGCGGCGc -3'
miRNA:   3'- -CCGGaCGcCACCGa-GGCUCU--CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 96300 0.74 0.197425
Target:  5'- gGGCCggcgGCGGcaaUGGCggggCCGGcGGCGGCAa -3'
miRNA:   3'- -CCGGa---CGCC---ACCGa---GGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 88886 0.74 0.197425
Target:  5'- cGGCg-GCGGcGGCUcccgCCGGGGGCGGCu -3'
miRNA:   3'- -CCGgaCGCCaCCGA----GGCUCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 37150 0.73 0.222437
Target:  5'- gGGCCUuuGG-GGCggCCGGGAaGCGGCAc -3'
miRNA:   3'- -CCGGAcgCCaCCGa-GGCUCU-CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 103790 0.73 0.238147
Target:  5'- cGGCCgGCGG-GGCUuccgccgCCGGcGGCGGCAc -3'
miRNA:   3'- -CCGGaCGCCaCCGA-------GGCUcUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 32985 0.72 0.255956
Target:  5'- cGCCgggGCGGgcagGGCggCCG-GAGCGGCc -3'
miRNA:   3'- cCGGa--CGCCa---CCGa-GGCuCUCGCCGu -5'
6353 5' -62.7 NC_001847.1 + 24407 0.72 0.261929
Target:  5'- cGGCC-GUGGcGGCcgCCGuggacAGAGCGGCAa -3'
miRNA:   3'- -CCGGaCGCCaCCGa-GGC-----UCUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 978 0.72 0.274215
Target:  5'- gGGCCgGCGG-GGCuUCCGccgcGGCGGCGg -3'
miRNA:   3'- -CCGGaCGCCaCCG-AGGCuc--UCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 11324 0.72 0.250095
Target:  5'- aGGCCggcggGCGGcUGGCgCCG-GAGCGGgAg -3'
miRNA:   3'- -CCGGa----CGCC-ACCGaGGCuCUCGCCgU- -5'
6353 5' -62.7 NC_001847.1 + 118423 0.72 0.27359
Target:  5'- cGCCUGCGGUcucggcgccguggGGCUCCuGcuGGUGGCGg -3'
miRNA:   3'- cCGGACGCCA-------------CCGAGG-CucUCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 11660 0.72 0.28053
Target:  5'- cGCUUGCGGcGGCcccagCCGAGcccGCGGCGg -3'
miRNA:   3'- cCGGACGCCaCCGa----GGCUCu--CGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 34457 0.72 0.261929
Target:  5'- aGGCC-GCGGUGGCcgCCG---GCGGCGa -3'
miRNA:   3'- -CCGGaCGCCACCGa-GGCucuCGCCGU- -5'
6353 5' -62.7 NC_001847.1 + 133921 0.72 0.261929
Target:  5'- uGGCCUGCGGgcGGCgcgcgCUG-GAGCuGGCGc -3'
miRNA:   3'- -CCGGACGCCa-CCGa----GGCuCUCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 31108 0.72 0.261929
Target:  5'- uGGCCUGCGGgcGGCgcgcgCUG-GAGCuGGCGc -3'
miRNA:   3'- -CCGGACGCCa-CCGa----GGCuCUCG-CCGU- -5'
6353 5' -62.7 NC_001847.1 + 21949 0.72 0.28053
Target:  5'- cGGCUcGCGGcGGCaCCGGGGGgGGCu -3'
miRNA:   3'- -CCGGaCGCCaCCGaGGCUCUCgCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.