miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 28098 0.66 0.978615
Target:  5'- cUGcCCGGGGCCGCGcGCg-------- -3'
miRNA:   3'- aGC-GGCCCUGGCGCuCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 32195 0.66 0.970905
Target:  5'- -gGCCGGGGCCcgaggcccGCGGGCggggccgggGCg -3'
miRNA:   3'- agCGGCCCUGG--------CGCUCGaaauaua--UG- -5'
6354 3' -52.4 NC_001847.1 + 96657 0.66 0.970608
Target:  5'- nCGCgGGGGCCGgCGGGUacgcgucGUGCg -3'
miRNA:   3'- aGCGgCCCUGGC-GCUCGaaaua--UAUG- -5'
6354 3' -52.4 NC_001847.1 + 44934 0.66 0.970608
Target:  5'- gUCGCUGGGGCgCuCGGGCUgggcg-ACg -3'
miRNA:   3'- -AGCGGCCCUG-GcGCUCGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 21914 0.66 0.970608
Target:  5'- -gGCCGaGGCCGCGGGCgag----GCg -3'
miRNA:   3'- agCGGCcCUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 26519 0.66 0.970007
Target:  5'- -gGCgCGGGGCCGgGGGCguucggccAUGCu -3'
miRNA:   3'- agCG-GCCCUGGCgCUCGaaaua---UAUG- -5'
6354 3' -52.4 NC_001847.1 + 33756 0.66 0.967515
Target:  5'- aUUGCCGGcGgcGCCGCGGGCa-------- -3'
miRNA:   3'- -AGCGGCC-C--UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 100853 0.66 0.967515
Target:  5'- cUCGCUGacGGCCGCGAGCgcg----GCg -3'
miRNA:   3'- -AGCGGCc-CUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 1965 0.66 0.96454
Target:  5'- cUCGCCGGGcggcGCCGCcAGCgccuccccgGCa -3'
miRNA:   3'- -AGCGGCCC----UGGCGcUCGaaauaua--UG- -5'
6354 3' -52.4 NC_001847.1 + 122214 0.66 0.971784
Target:  5'- -aGCCGGGGCCGgGuGCccucagggGCg -3'
miRNA:   3'- agCGGCCCUGGCgCuCGaaauaua-UG- -5'
6354 3' -52.4 NC_001847.1 + 31437 0.66 0.972359
Target:  5'- -gGCCGGcGGCCGCG-GCggccccgGCg -3'
miRNA:   3'- agCGGCC-CUGGCGCuCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 16458 0.66 0.973484
Target:  5'- -aGCCGGGGCUGCG-GCc-------- -3'
miRNA:   3'- agCGGCCCUGGCGCuCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 104829 0.66 0.978615
Target:  5'- cCGCCGGGGggGCGGGCg-------- -3'
miRNA:   3'- aGCGGCCCUggCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 79540 0.66 0.978615
Target:  5'- cCGUCGGGGCCGgGggGGCUggg---GCu -3'
miRNA:   3'- aGCGGCCCUGGCgC--UCGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 39012 0.66 0.97615
Target:  5'- cUCGUCGcGGAgUGCG-GCUaaUAUAUGCu -3'
miRNA:   3'- -AGCGGC-CCUgGCGCuCGAa-AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 56603 0.66 0.97615
Target:  5'- gCGCCGGGACuCGCGucuuccGGCg-------- -3'
miRNA:   3'- aGCGGCCCUG-GCGC------UCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 13388 0.66 0.97615
Target:  5'- aCGuCCGGGcgcGCCGCGGGCc-------- -3'
miRNA:   3'- aGC-GGCCC---UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 78287 0.66 0.975108
Target:  5'- gCGCCcGGGCCGCcGGGCgcagacgGCg -3'
miRNA:   3'- aGCGGcCCUGGCG-CUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 57756 0.66 0.974575
Target:  5'- cCGCCGGG-CCaCGAGCgagagcggGCg -3'
miRNA:   3'- aGCGGCCCuGGcGCUCGaaauaua-UG- -5'
6354 3' -52.4 NC_001847.1 + 14448 0.66 0.974305
Target:  5'- gCGCCGGGgugcgcgGCCGCGgccucugggucuccgGGCUcaccgaagcUGUGUACa -3'
miRNA:   3'- aGCGGCCC-------UGGCGC---------------UCGAa--------AUAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.