miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 49214 0.92 0.069906
Target:  5'- gCGCCGGGGcCCGCGGGCUUcGUGUACg -3'
miRNA:   3'- aGCGGCCCU-GGCGCUCGAAaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 75141 0.7 0.837893
Target:  5'- cCGCCGGGGCCgGCGGuGCUcucggUUAgguuuUGCa -3'
miRNA:   3'- aGCGGCCCUGG-CGCU-CGA-----AAUau---AUG- -5'
6354 3' -52.4 NC_001847.1 + 97215 0.7 0.867864
Target:  5'- cUCGCCGGGG-CGCGAGUcgggaccaagcgugUUgucgcggugUAUAUACa -3'
miRNA:   3'- -AGCGGCCCUgGCGCUCG--------------AA---------AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 28098 0.66 0.978615
Target:  5'- cUGcCCGGGGCCGCGcGCg-------- -3'
miRNA:   3'- aGC-GGCCCUGGCGCuCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 83951 0.75 0.598281
Target:  5'- gCGCgCGGGGCCGgGGGCggagacGUGUACc -3'
miRNA:   3'- aGCG-GCCCUGGCgCUCGaaa---UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 57302 0.75 0.608836
Target:  5'- cUGCCGGG-CCGCGAGCUc------- -3'
miRNA:   3'- aGCGGCCCuGGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 3869 0.75 0.629994
Target:  5'- gCGCCGGGGCUGCGcAGCUc------- -3'
miRNA:   3'- aGCGGCCCUGGCGC-UCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 70378 0.72 0.744488
Target:  5'- gCGCCGGGG-CGCGAGCUc------- -3'
miRNA:   3'- aGCGGCCCUgGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 13117 0.72 0.764331
Target:  5'- -gGCCGGGGCgCGCGGGCg-------- -3'
miRNA:   3'- agCGGCCCUG-GCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 43286 0.71 0.820527
Target:  5'- aCGCCGcGcGugCGCGGGCUgcgGaGUACg -3'
miRNA:   3'- aGCGGC-C-CugGCGCUCGAaa-UaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 41647 0.71 0.793127
Target:  5'- gCGCCGGGggGCCGCGAGaa----GUACc -3'
miRNA:   3'- aGCGGCCC--UGGCGCUCgaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 103903 0.72 0.76335
Target:  5'- aCGCCGGGcgccgcgGCCGCGGGCg-------- -3'
miRNA:   3'- aGCGGCCC-------UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 105795 0.79 0.410143
Target:  5'- cCGCCGGGGCCGCGcGCUggAgccGCg -3'
miRNA:   3'- aGCGGCCCUGGCGCuCGAaaUauaUG- -5'
6354 3' -52.4 NC_001847.1 + 132451 0.71 0.811565
Target:  5'- -gGCCGGGgcGCCGCGGGCg-------- -3'
miRNA:   3'- agCGGCCC--UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 66067 0.76 0.566805
Target:  5'- gCGCCGGGGgcgaCGCGGGCUUUGagcUGCu -3'
miRNA:   3'- aGCGGCCCUg---GCGCUCGAAAUau-AUG- -5'
6354 3' -52.4 NC_001847.1 + 25239 0.72 0.744488
Target:  5'- gUCGCgGGGACaaCGAGCUgccgGUACa -3'
miRNA:   3'- -AGCGgCCCUGgcGCUCGAaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 9660 0.71 0.819638
Target:  5'- -aGCCGGGcguccucgcgcccGCCGCGAGCUg------- -3'
miRNA:   3'- agCGGCCC-------------UGGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 52284 0.7 0.859262
Target:  5'- gCGCCGGcuuugugugcgcGACCGCGGGCgcgggcgGCg -3'
miRNA:   3'- aGCGGCC------------CUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 15523 0.75 0.58355
Target:  5'- cUCGgCGGGAgCCGCGGGCUgcuggcgccgGUGCg -3'
miRNA:   3'- -AGCgGCCCU-GGCGCUCGAaaua------UAUG- -5'
6354 3' -52.4 NC_001847.1 + 94816 0.75 0.629994
Target:  5'- gUCGCCGaGGGCCGCagccGCUUUGUGgucuuUACg -3'
miRNA:   3'- -AGCGGC-CCUGGCGcu--CGAAAUAU-----AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.