Results 1 - 20 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 125863 | 1.11 | 0.003842 |
Target: 5'- gUCGCCGGGACCGCGAGCUUUAUAUACa -3' miRNA: 3'- -AGCGGCCCUGGCGCUCGAAAUAUAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 49214 | 0.92 | 0.069906 |
Target: 5'- gCGCCGGGGcCCGCGGGCUUcGUGUACg -3' miRNA: 3'- aGCGGCCCU-GGCGCUCGAAaUAUAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 105795 | 0.79 | 0.410143 |
Target: 5'- cCGCCGGGGCCGCGcGCUggAgccGCg -3' miRNA: 3'- aGCGGCCCUGGCGCuCGAaaUauaUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 90328 | 0.76 | 0.535769 |
Target: 5'- cCGCCGGGGCCGgGGGCg-------- -3' miRNA: 3'- aGCGGCCCUGGCgCUCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 66067 | 0.76 | 0.566805 |
Target: 5'- gCGCCGGGGgcgaCGCGGGCUUUGagcUGCu -3' miRNA: 3'- aGCGGCCCUg---GCGCUCGAAAUau-AUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 15523 | 0.75 | 0.58355 |
Target: 5'- cUCGgCGGGAgCCGCGGGCUgcuggcgccgGUGCg -3' miRNA: 3'- -AGCgGCCCU-GGCGCUCGAaaua------UAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 133979 | 0.75 | 0.58355 |
Target: 5'- gCGCCGGGGCUGgGAGCgcgcgcgGCa -3' miRNA: 3'- aGCGGCCCUGGCgCUCGaaauauaUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 83951 | 0.75 | 0.598281 |
Target: 5'- gCGCgCGGGGCCGgGGGCggagacGUGUACc -3' miRNA: 3'- aGCG-GCCCUGGCgCUCGaaa---UAUAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 57302 | 0.75 | 0.608836 |
Target: 5'- cUGCCGGG-CCGCGAGCUc------- -3' miRNA: 3'- aGCGGCCCuGGCGCUCGAaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 3869 | 0.75 | 0.629994 |
Target: 5'- gCGCCGGGGCUGCGcAGCUc------- -3' miRNA: 3'- aGCGGCCCUGGCGC-UCGAaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 94816 | 0.75 | 0.629994 |
Target: 5'- gUCGCCGaGGGCCGCagccGCUUUGUGgucuuUACg -3' miRNA: 3'- -AGCGGC-CCUGGCGcu--CGAAAUAU-----AUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 130926 | 0.74 | 0.672259 |
Target: 5'- gCGCCGGcACCGCGcagGGCUUUGgcUGCc -3' miRNA: 3'- aGCGGCCcUGGCGC---UCGAAAUauAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 38948 | 0.74 | 0.682762 |
Target: 5'- -gGCCcgGGGGCCGCGAGCgccAUGgcgGCg -3' miRNA: 3'- agCGG--CCCUGGCGCUCGaaaUAUa--UG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 54497 | 0.73 | 0.693219 |
Target: 5'- gCGCCGGGucucCCGCGAGCg-------- -3' miRNA: 3'- aGCGGCCCu---GGCGCUCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 126617 | 0.73 | 0.693219 |
Target: 5'- aCGCCGGGACagagGCGGGCgucgaaGUGCc -3' miRNA: 3'- aGCGGCCCUGg---CGCUCGaaaua-UAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 70378 | 0.72 | 0.744488 |
Target: 5'- gCGCCGGGG-CGCGAGCUc------- -3' miRNA: 3'- aGCGGCCCUgGCGCUCGAaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 25239 | 0.72 | 0.744488 |
Target: 5'- gUCGCgGGGACaaCGAGCUgccgGUACa -3' miRNA: 3'- -AGCGgCCCUGgcGCUCGAaauaUAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 103903 | 0.72 | 0.76335 |
Target: 5'- aCGCCGGGcgccgcgGCCGCGGGCg-------- -3' miRNA: 3'- aGCGGCCC-------UGGCGCUCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 1090 | 0.72 | 0.76335 |
Target: 5'- aCGCCGGGcgccgcgGCCGCGGGCg-------- -3' miRNA: 3'- aGCGGCCC-------UGGCGCUCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 123570 | 0.72 | 0.764331 |
Target: 5'- -gGCCGGGgccGCCGCGAGCg-------- -3' miRNA: 3'- agCGGCCC---UGGCGCUCGaaauauaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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