miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 892 0.68 0.923462
Target:  5'- gCGCCGGGGCCGCcgcGGCc-------- -3'
miRNA:   3'- aGCGGCCCUGGCGc--UCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 1090 0.72 0.76335
Target:  5'- aCGCCGGGcgccgcgGCCGCGGGCg-------- -3'
miRNA:   3'- aGCGGCCC-------UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 1965 0.66 0.96454
Target:  5'- cUCGCCGGGcggcGCCGCcAGCgccuccccgGCa -3'
miRNA:   3'- -AGCGGCCC----UGGCGcUCGaaauaua--UG- -5'
6354 3' -52.4 NC_001847.1 + 2295 0.67 0.960651
Target:  5'- gCGgCGGGGCCGcCGGGCggcAUGgGCc -3'
miRNA:   3'- aGCgGCCCUGGC-GCUCGaaaUAUaUG- -5'
6354 3' -52.4 NC_001847.1 + 2784 0.69 0.884953
Target:  5'- cCGCCGgcggccuccaGGGCCGCGAGCg-------- -3'
miRNA:   3'- aGCGGC----------CCUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 2983 0.67 0.960651
Target:  5'- cCGCCGGGGCCG-GcGCUggAgccGCg -3'
miRNA:   3'- aGCGGCCCUGGCgCuCGAaaUauaUG- -5'
6354 3' -52.4 NC_001847.1 + 3211 0.66 0.97716
Target:  5'- aUCGCCGGcgcacgugccuccgcGccGCCGCG-GCUUgcgGUACa -3'
miRNA:   3'- -AGCGGCC---------------C--UGGCGCuCGAAauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 3486 0.67 0.951592
Target:  5'- gCGCCGaGAgcucgcacaugagcCgCGCGAGCUUcGUGUACg -3'
miRNA:   3'- aGCGGCcCU--------------G-GCGCUCGAAaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 3588 0.69 0.898787
Target:  5'- -gGuCCGGGcCCGCGAGCUUc------ -3'
miRNA:   3'- agC-GGCCCuGGCGCUCGAAauauaug -5'
6354 3' -52.4 NC_001847.1 + 3808 0.69 0.891992
Target:  5'- gUGCCGGcacggggcgucGGCCGCGAGCguggcgUUGUucGCg -3'
miRNA:   3'- aGCGGCC-----------CUGGCGCUCGa-----AAUAuaUG- -5'
6354 3' -52.4 NC_001847.1 + 3869 0.75 0.629994
Target:  5'- gCGCCGGGGCUGCGcAGCUc------- -3'
miRNA:   3'- aGCGGCCCUGGCGC-UCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 5824 0.68 0.917674
Target:  5'- gCGCCGGGugCGUGcAGCa-------- -3'
miRNA:   3'- aGCGGCCCugGCGC-UCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 7387 0.67 0.948578
Target:  5'- cUGCCGGGcaaGCCGCcGcAGCUgc-UGUACc -3'
miRNA:   3'- aGCGGCCC---UGGCG-C-UCGAaauAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 8402 0.7 0.877675
Target:  5'- cUGCCGGGAuaGCGGGagggcAUAUGCa -3'
miRNA:   3'- aGCGGCCCUggCGCUCgaaa-UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 8468 0.68 0.939294
Target:  5'- gCGCCGGG-CCGgGGGCg-------- -3'
miRNA:   3'- aGCGGCCCuGGCgCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 9660 0.71 0.819638
Target:  5'- -aGCCGGGcguccucgcgcccGCCGCGAGCUg------- -3'
miRNA:   3'- agCGGCCC-------------UGGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 13117 0.72 0.764331
Target:  5'- -gGCCGGGGCgCGCGGGCg-------- -3'
miRNA:   3'- agCGGCCCUG-GCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 13388 0.66 0.97615
Target:  5'- aCGuCCGGGcgcGCCGCGGGCc-------- -3'
miRNA:   3'- aGC-GGCCC---UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 13549 0.68 0.934272
Target:  5'- cCGCCGGGGCgGCGcGGUgggu--UGCa -3'
miRNA:   3'- aGCGGCCCUGgCGC-UCGaaauauAUG- -5'
6354 3' -52.4 NC_001847.1 + 14037 0.67 0.948578
Target:  5'- gCGCUGGucGGCCGCGAGCc-------- -3'
miRNA:   3'- aGCGGCC--CUGGCGCUCGaaauauaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.