miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 14448 0.66 0.974305
Target:  5'- gCGCCGGGgugcgcgGCCGCGgccucugggucuccgGGCUcaccgaagcUGUGUACa -3'
miRNA:   3'- aGCGGCCC-------UGGCGC---------------UCGAa--------AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 118813 0.66 0.973484
Target:  5'- cUCGCCGuuGCgGUGAGCUUgcc-UACa -3'
miRNA:   3'- -AGCGGCccUGgCGCUCGAAauauAUG- -5'
6354 3' -52.4 NC_001847.1 + 62486 0.66 0.973484
Target:  5'- gUCGCCGGcgggcGGCCGCGGGgUg-----GCg -3'
miRNA:   3'- -AGCGGCC-----CUGGCGCUCgAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 54813 0.66 0.973484
Target:  5'- gCGCUGGcGAgCGCGGGCacgGUGguggACa -3'
miRNA:   3'- aGCGGCC-CUgGCGCUCGaaaUAUa---UG- -5'
6354 3' -52.4 NC_001847.1 + 99088 0.66 0.973484
Target:  5'- gUGCUGGGGCCugucuGCGAGCa-------- -3'
miRNA:   3'- aGCGGCCCUGG-----CGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 16458 0.66 0.973484
Target:  5'- -aGCCGGGGCUGCG-GCc-------- -3'
miRNA:   3'- agCGGCCCUGGCGCuCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 33890 0.66 0.973484
Target:  5'- cCGCCGcgcguGGCCGCGGGC-----GUGCa -3'
miRNA:   3'- aGCGGCc----CUGGCGCUCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 62564 0.66 0.973206
Target:  5'- cCGCCGcGGCCGCGguugcucGGCUUUGcguuUGCc -3'
miRNA:   3'- aGCGGCcCUGGCGC-------UCGAAAUau--AUG- -5'
6354 3' -52.4 NC_001847.1 + 68469 0.66 0.973206
Target:  5'- -gGCCGGGGCCccgccgcGCGGGCg-------- -3'
miRNA:   3'- agCGGCCCUGG-------CGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 31437 0.66 0.972359
Target:  5'- -gGCCGGcGGCCGCG-GCggccccgGCg -3'
miRNA:   3'- agCGGCC-CUGGCGCuCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 134250 0.66 0.972359
Target:  5'- -gGCCGGcGGCCGCG-GCggccccgGCg -3'
miRNA:   3'- agCGGCC-CUGGCGCuCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 122214 0.66 0.971784
Target:  5'- -aGCCGGGGCCGgGuGCccucagggGCg -3'
miRNA:   3'- agCGGCCCUGGCgCuCGaaauaua-UG- -5'
6354 3' -52.4 NC_001847.1 + 135008 0.66 0.970905
Target:  5'- -gGCCGGGGCCcgaggcccGCGGGCggggccgggGCg -3'
miRNA:   3'- agCGGCCCUGG--------CGCUCGaaauaua--UG- -5'
6354 3' -52.4 NC_001847.1 + 32195 0.66 0.970905
Target:  5'- -gGCCGGGGCCcgaggcccGCGGGCggggccgggGCg -3'
miRNA:   3'- agCGGCCCUGG--------CGCUCGaaauaua--UG- -5'
6354 3' -52.4 NC_001847.1 + 122648 0.66 0.970608
Target:  5'- gCGCCGGcugcGGCCucCGGGCUUUAcgucuuUGUGCu -3'
miRNA:   3'- aGCGGCC----CUGGc-GCUCGAAAU------AUAUG- -5'
6354 3' -52.4 NC_001847.1 + 21914 0.66 0.970608
Target:  5'- -gGCCGaGGCCGCGGGCgag----GCg -3'
miRNA:   3'- agCGGCcCUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 96657 0.66 0.970608
Target:  5'- nCGCgGGGGCCGgCGGGUacgcgucGUGCg -3'
miRNA:   3'- aGCGgCCCUGGC-GCUCGaaaua--UAUG- -5'
6354 3' -52.4 NC_001847.1 + 44934 0.66 0.970608
Target:  5'- gUCGCUGGGGCgCuCGGGCUgggcg-ACg -3'
miRNA:   3'- -AGCGGCCCUG-GcGCUCGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 124727 0.66 0.970608
Target:  5'- -gGCCGaGGCCGCGGGCgag----GCg -3'
miRNA:   3'- agCGGCcCUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 88809 0.66 0.970608
Target:  5'- cCGCCGacgcGGcCCGCGGGCggcc-GUGCu -3'
miRNA:   3'- aGCGGC----CCuGGCGCUCGaaauaUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.