Results 1 - 20 of 115 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 124456 | 1.08 | 0.001296 |
Target: 5'- cCGGCGGUGCGGGAAGCGGCUGGUUCGc -3' miRNA: 3'- -GCCGCCACGCCCUUCGCCGACCAAGC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 55083 | 0.77 | 0.184457 |
Target: 5'- uGGCGGccGCGGGggGCGGgUGGg-CGg -3' miRNA: 3'- gCCGCCa-CGCCCuuCGCCgACCaaGC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 33500 | 0.75 | 0.240087 |
Target: 5'- gCGGCGGcGCGGGcGGCGGCgGGcgCc -3' miRNA: 3'- -GCCGCCaCGCCCuUCGCCGaCCaaGc -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 15784 | 0.75 | 0.221535 |
Target: 5'- cCGGCGGcaagcgccgcgcgGCGGGAGGCGGC-GGUguaCGa -3' miRNA: 3'- -GCCGCCa------------CGCCCUUCGCCGaCCAa--GC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 96411 | 0.75 | 0.229022 |
Target: 5'- gCGGCGGcaaugGCGGGGccGGCGGCaGGcgCGg -3' miRNA: 3'- -GCCGCCa----CGCCCU--UCGCCGaCCaaGC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 78298 | 0.73 | 0.316013 |
Target: 5'- aGGCGGUGCuc-GGGCGGCUGGgcCGc -3' miRNA: 3'- gCCGCCACGcccUUCGCCGACCaaGC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 58673 | 0.73 | 0.316013 |
Target: 5'- gCGGCGGUuggGCGGGcGGCaGGCUGGc--- -3' miRNA: 3'- -GCCGCCA---CGCCCuUCG-CCGACCaagc -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 28626 | 0.73 | 0.323098 |
Target: 5'- gCGGCGGccGCGGGGcccGCGGCcGuGUUCGu -3' miRNA: 3'- -GCCGCCa-CGCCCUu--CGCCGaC-CAAGC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 131439 | 0.73 | 0.323098 |
Target: 5'- gCGGCGGccGCGGGGcccGCGGCcGuGUUCGu -3' miRNA: 3'- -GCCGCCa-CGCCCUu--CGCCGaC-CAAGC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 103239 | 0.72 | 0.345059 |
Target: 5'- gGGCGG-GCGGGcGGCGGC-GGcggCGg -3' miRNA: 3'- gCCGCCaCGCCCuUCGCCGaCCaa-GC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 108035 | 0.72 | 0.337622 |
Target: 5'- gCGGCGGccgGCGGGGcgcgcGCGGCaaagGGUUUGc -3' miRNA: 3'- -GCCGCCa--CGCCCUu----CGCCGa---CCAAGC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 15338 | 0.72 | 0.337622 |
Target: 5'- gGGCGG-GCGGGggGUGcGUgaUGGcUUCGa -3' miRNA: 3'- gCCGCCaCGCCCuuCGC-CG--ACC-AAGC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 100506 | 0.72 | 0.375974 |
Target: 5'- aCGGCGGUGCGGuGuGGUgGGCUGcGggUCGc -3' miRNA: 3'- -GCCGCCACGCC-CuUCG-CCGAC-Ca-AGC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 130892 | 0.72 | 0.368072 |
Target: 5'- -aGCGGggacugagGCGGGggGCGGC-GGUgcccUCGg -3' miRNA: 3'- gcCGCCa-------CGCCCuuCGCCGaCCA----AGC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 54496 | 0.72 | 0.3728 |
Target: 5'- aCGGCGGcgccggggccgggGUGGGggGCGG-UGGggCGg -3' miRNA: 3'- -GCCGCCa------------CGCCCuuCGCCgACCaaGC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 53817 | 0.72 | 0.360286 |
Target: 5'- aGGCGuGUcGCGGGc-GCGGCUGGcggCGg -3' miRNA: 3'- gCCGC-CA-CGCCCuuCGCCGACCaa-GC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 28079 | 0.72 | 0.368072 |
Target: 5'- -aGCGGggacugagGCGGGggGCGGC-GGUgcccUCGg -3' miRNA: 3'- gcCGCCa-------CGCCCuuCGCCGaCCA----AGC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 426 | 0.72 | 0.345059 |
Target: 5'- gGGCGG-GCGGGcGGCGGC-GGcggCGg -3' miRNA: 3'- gCCGCCaCGCCCuUCGCCGaCCaa-GC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 5222 | 0.72 | 0.337622 |
Target: 5'- gCGGCGGccgGCGGGGcgcgcGCGGCaaagGGUUUGc -3' miRNA: 3'- -GCCGCCa--CGCCCUu----CGCCGa---CCAAGC- -5' |
|||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 95635 | 0.72 | 0.375974 |
Target: 5'- uGGCGGgccgcucuggcGCGGGggGCGGCgcgggccgcucUGGcgCGg -3' miRNA: 3'- gCCGCCa----------CGCCCuuCGCCG-----------ACCaaGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home