miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 3' -60.6 NC_001847.1 + 86479 0.67 0.622235
Target:  5'- aCGGCGGcacggacgacgaggcUGCGGGGgcGGCGGCgccccgccgccgcgGcGUUCa -3'
miRNA:   3'- -GCCGCC---------------ACGCCCU--UCGCCGa-------------C-CAAGc -5'
6355 3' -60.6 NC_001847.1 + 119527 0.67 0.634173
Target:  5'- gCGGCGGccGCGGccGGCaGGCUGGg--- -3'
miRNA:   3'- -GCCGCCa-CGCCcuUCG-CCGACCaagc -5'
6355 3' -60.6 NC_001847.1 + 115668 0.67 0.634173
Target:  5'- -cGCGuccGUGCGGGuGAGCGGCUGcg-CGg -3'
miRNA:   3'- gcCGC---CACGCCC-UUCGCCGACcaaGC- -5'
6355 3' -60.6 NC_001847.1 + 15558 0.67 0.634173
Target:  5'- gGGUGGcGCGGGGgaacccccaucGGCGGCaGGcggCGg -3'
miRNA:   3'- gCCGCCaCGCCCU-----------UCGCCGaCCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 4871 0.67 0.634173
Target:  5'- gGGgGGgcgGCGGGcAGCGGCaGGg--- -3'
miRNA:   3'- gCCgCCa--CGCCCuUCGCCGaCCaagc -5'
6355 3' -60.6 NC_001847.1 + 4803 0.67 0.633179
Target:  5'- gCGGUGGccUGgGGGAgacgggguaggggGGCGGgUGGgUCGg -3'
miRNA:   3'- -GCCGCC--ACgCCCU-------------UCGCCgACCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 31419 0.67 0.624224
Target:  5'- cCGGCGccgGCGGGcGGCGGCcGGcggccgCGg -3'
miRNA:   3'- -GCCGCca-CGCCCuUCGCCGaCCaa----GC- -5'
6355 3' -60.6 NC_001847.1 + 37159 0.67 0.624224
Target:  5'- gGGCGGc-CGGGAAGCGGCacc-UCGu -3'
miRNA:   3'- gCCGCCacGCCCUUCGCCGaccaAGC- -5'
6355 3' -60.6 NC_001847.1 + 134387 0.67 0.624224
Target:  5'- aGGCGGUGCaGGccAGUGGUgGGcUCGu -3'
miRNA:   3'- gCCGCCACGcCCu-UCGCCGaCCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 8463 0.67 0.644121
Target:  5'- aGGCGGcgccggGCcGGggGCGGCgcucggccgGGggCGg -3'
miRNA:   3'- gCCGCCa-----CGcCCuuCGCCGa--------CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 116164 0.67 0.654059
Target:  5'- uGGCGGccGCGGGcgccGCGGCcgcgcUGGUcgUCGc -3'
miRNA:   3'- gCCGCCa-CGCCCuu--CGCCG-----ACCA--AGC- -5'
6355 3' -60.6 NC_001847.1 + 42963 0.66 0.663981
Target:  5'- gCGGgGGggGCGGGccgccGGcCGGCccgGGUUCGc -3'
miRNA:   3'- -GCCgCCa-CGCCCu----UC-GCCGa--CCAAGC- -5'
6355 3' -60.6 NC_001847.1 + 32140 0.66 0.713066
Target:  5'- gGGCGGggGCGGGGgcGGgGGCcccgGGggCc -3'
miRNA:   3'- gCCGCCa-CGCCCU--UCgCCGa---CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 12352 0.66 0.703346
Target:  5'- gCGGUGGgccugGCucGGGAgcgucGGCGGCUGcGgccUCGg -3'
miRNA:   3'- -GCCGCCa----CG--CCCU-----UCGCCGAC-Ca--AGC- -5'
6355 3' -60.6 NC_001847.1 + 64196 0.66 0.703346
Target:  5'- gCGGCGGgaacaugcGCGGGucggggugcccGGGCGGC-GGcgCGa -3'
miRNA:   3'- -GCCGCCa-------CGCCC-----------UUCGCCGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 16575 0.66 0.69357
Target:  5'- -cGCGGgacaGCGGGGucggGGCGGCguggGGUgccggCGa -3'
miRNA:   3'- gcCGCCa---CGCCCU----UCGCCGa---CCAa----GC- -5'
6355 3' -60.6 NC_001847.1 + 112088 0.66 0.683744
Target:  5'- cCGGCGGUcCGGcGcaAGGUGGaCUGGcUCGa -3'
miRNA:   3'- -GCCGCCAcGCC-C--UUCGCC-GACCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 52898 0.66 0.683744
Target:  5'- uGGCcaguccuaGGUccGCGGGcAGCGGCUcGGggCGc -3'
miRNA:   3'- gCCG--------CCA--CGCCCuUCGCCGA-CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 47049 0.66 0.673879
Target:  5'- -cGCGGUGCGuGucGCGGCcGGcgCGg -3'
miRNA:   3'- gcCGCCACGCcCuuCGCCGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 14170 0.66 0.673879
Target:  5'- gGGCGGccGCGcuaaaggcacGGGAGgGGCUGGcggCGg -3'
miRNA:   3'- gCCGCCa-CGC----------CCUUCgCCGACCaa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.