miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 3' -60.6 NC_001847.1 + 69467 0.7 0.479187
Target:  5'- gCGGCGGcgGCGGGGcuccugcuGGCcgGGCUGGcggCGu -3'
miRNA:   3'- -GCCGCCa-CGCCCU--------UCG--CCGACCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 99803 0.7 0.470042
Target:  5'- -uGUGGUGCGGGGucggAGCGGCcgGGggCc -3'
miRNA:   3'- gcCGCCACGCCCU----UCGCCGa-CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 54496 0.72 0.3728
Target:  5'- aCGGCGGcgccggggccgggGUGGGggGCGG-UGGggCGg -3'
miRNA:   3'- -GCCGCCa------------CGCCCuuCGCCgACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 58673 0.73 0.316013
Target:  5'- gCGGCGGUuggGCGGGcGGCaGGCUGGc--- -3'
miRNA:   3'- -GCCGCCA---CGCCCuUCG-CCGACCaagc -5'
6355 3' -60.6 NC_001847.1 + 115274 0.68 0.555118
Target:  5'- uGGCGGUgGCGGGcuAAGCcGGCgcccccgGGcgCGg -3'
miRNA:   3'- gCCGCCA-CGCCC--UUCG-CCGa------CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 17147 0.69 0.507126
Target:  5'- aGGuUGG-GCGGGuGGGCGGUUGGcgUCGc -3'
miRNA:   3'- gCC-GCCaCGCCC-UUCGCCGACCa-AGC- -5'
6355 3' -60.6 NC_001847.1 + 41827 0.7 0.452024
Target:  5'- gGGCGGcGCGGGucccAG-GGCUGGggCa -3'
miRNA:   3'- gCCGCCaCGCCCu---UCgCCGACCaaGc -5'
6355 3' -60.6 NC_001847.1 + 33500 0.75 0.240087
Target:  5'- gCGGCGGcGCGGGcGGCGGCgGGcgCc -3'
miRNA:   3'- -GCCGCCaCGCCCuUCGCCGaCCaaGc -5'
6355 3' -60.6 NC_001847.1 + 75010 0.69 0.497733
Target:  5'- cCGGCGG-GCGGGggGCcagcgggcagaaGGCgccgucGGUgggCGg -3'
miRNA:   3'- -GCCGCCaCGCCCuuCG------------CCGa-----CCAa--GC- -5'
6355 3' -60.6 NC_001847.1 + 15784 0.75 0.221535
Target:  5'- cCGGCGGcaagcgccgcgcgGCGGGAGGCGGC-GGUguaCGa -3'
miRNA:   3'- -GCCGCCa------------CGCCCUUCGCCGaCCAa--GC- -5'
6355 3' -60.6 NC_001847.1 + 37385 0.7 0.452024
Target:  5'- cCGGCGGUGCGcuGAcaacgaucAGCGuGCUGGcgCGc -3'
miRNA:   3'- -GCCGCCACGCc-CU--------UCGC-CGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 7253 0.69 0.488418
Target:  5'- uGGCuGUGCGGGc-GCGGCgGGggCa -3'
miRNA:   3'- gCCGcCACGCCCuuCGCCGaCCaaGc -5'
6355 3' -60.6 NC_001847.1 + 134123 0.7 0.443157
Target:  5'- gCGGCGcGccGCGGGcGGCGGcCUGGUggagCGc -3'
miRNA:   3'- -GCCGC-Ca-CGCCCuUCGCC-GACCAa---GC- -5'
6355 3' -60.6 NC_001847.1 + 100506 0.72 0.375974
Target:  5'- aCGGCGGUGCGGuGuGGUgGGCUGcGggUCGc -3'
miRNA:   3'- -GCCGCCACGCC-CuUCG-CCGAC-Ca-AGC- -5'
6355 3' -60.6 NC_001847.1 + 103239 0.72 0.345059
Target:  5'- gGGCGG-GCGGGcGGCGGC-GGcggCGg -3'
miRNA:   3'- gCCGCCaCGCCCuUCGCCGaCCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 78298 0.73 0.316013
Target:  5'- aGGCGGUGCuc-GGGCGGCUGGgcCGc -3'
miRNA:   3'- gCCGCCACGcccUUCGCCGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 19801 0.68 0.594439
Target:  5'- uCGGCGGagGCGGu-GGCGGUggcGGggCGg -3'
miRNA:   3'- -GCCGCCa-CGCCcuUCGCCGa--CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 53706 0.68 0.574702
Target:  5'- gGGCGaGUcuGUGGGccGGCGGCUGGcgCu -3'
miRNA:   3'- gCCGC-CA--CGCCCu-UCGCCGACCaaGc -5'
6355 3' -60.6 NC_001847.1 + 103279 0.69 0.534772
Target:  5'- gCGGCGGcgGCGGcGGcagcagcGGCGGCggcGGggCGg -3'
miRNA:   3'- -GCCGCCa-CGCC-CU-------UCGCCGa--CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 134843 0.69 0.507126
Target:  5'- cCGGCGGggcGCGGGGA-CGGCgcccgcgcgGGcUCGg -3'
miRNA:   3'- -GCCGCCa--CGCCCUUcGCCGa--------CCaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.