miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 3' -60.6 NC_001847.1 + 16575 0.66 0.69357
Target:  5'- -cGCGGgacaGCGGGGucggGGCGGCguggGGUgccggCGa -3'
miRNA:   3'- gcCGCCa---CGCCCU----UCGCCGa---CCAa----GC- -5'
6355 3' -60.6 NC_001847.1 + 17147 0.69 0.507126
Target:  5'- aGGuUGG-GCGGGuGGGCGGUUGGcgUCGc -3'
miRNA:   3'- gCC-GCCaCGCCC-UUCGCCGACCa-AGC- -5'
6355 3' -60.6 NC_001847.1 + 17890 0.71 0.383183
Target:  5'- gGGCGGgGCGGGcGGCGGCgugcuguUGGUa-- -3'
miRNA:   3'- gCCGCCaCGCCCuUCGCCG-------ACCAagc -5'
6355 3' -60.6 NC_001847.1 + 18191 0.66 0.703346
Target:  5'- uGGCGGacgcGCGGcGAGGUcucgGGCUGGcggUCu -3'
miRNA:   3'- gCCGCCa---CGCC-CUUCG----CCGACCa--AGc -5'
6355 3' -60.6 NC_001847.1 + 19744 0.66 0.663981
Target:  5'- gCGGCGGgccgcuuaGCGGGAAgGCGGggugcgGGcUCGg -3'
miRNA:   3'- -GCCGCCa-------CGCCCUU-CGCCga----CCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 19801 0.68 0.594439
Target:  5'- uCGGCGGagGCGGu-GGCGGUggcGGggCGg -3'
miRNA:   3'- -GCCGCCa-CGCCcuUCGCCGa--CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 21864 0.7 0.452024
Target:  5'- aGGUGGUGCGGGGgcugcGGCGcGCUGc--CGa -3'
miRNA:   3'- gCCGCCACGCCCU-----UCGC-CGACcaaGC- -5'
6355 3' -60.6 NC_001847.1 + 25991 0.68 0.584554
Target:  5'- gGGCGG-GCGGGcGGGCGcGCaGGcgCGc -3'
miRNA:   3'- gCCGCCaCGCCC-UUCGC-CGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 27528 0.7 0.470952
Target:  5'- gCGGCGGggacgcccgagaacgGCGGcGcGGCGGCUGGg--- -3'
miRNA:   3'- -GCCGCCa--------------CGCC-CuUCGCCGACCaagc -5'
6355 3' -60.6 NC_001847.1 + 27748 0.69 0.535735
Target:  5'- gCGGCGGUugcgGCGGGggGCuGUgcGGggCGu -3'
miRNA:   3'- -GCCGCCA----CGCCCuuCGcCGa-CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 28079 0.72 0.368072
Target:  5'- -aGCGGggacugagGCGGGggGCGGC-GGUgcccUCGg -3'
miRNA:   3'- gcCGCCa-------CGCCCuuCGCCGaCCA----AGC- -5'
6355 3' -60.6 NC_001847.1 + 28626 0.73 0.323098
Target:  5'- gCGGCGGccGCGGGGcccGCGGCcGuGUUCGu -3'
miRNA:   3'- -GCCGCCa-CGCCCUu--CGCCGaC-CAAGC- -5'
6355 3' -60.6 NC_001847.1 + 29079 0.7 0.479187
Target:  5'- uGGCGGUgGCGGGcGGCGuGCUG-UUUa -3'
miRNA:   3'- gCCGCCA-CGCCCuUCGC-CGACcAAGc -5'
6355 3' -60.6 NC_001847.1 + 30656 0.66 0.681774
Target:  5'- aGGCGGUGCuGGcgcuguuGGAG-GGCUacccggaGGUUCGg -3'
miRNA:   3'- gCCGCCACG-CC-------CUUCgCCGA-------CCAAGC- -5'
6355 3' -60.6 NC_001847.1 + 31298 0.69 0.497733
Target:  5'- aGGCGGgcGCGGGGAGCGggcucuGCUGcGUguuuUCGc -3'
miRNA:   3'- gCCGCCa-CGCCCUUCGC------CGAC-CA----AGC- -5'
6355 3' -60.6 NC_001847.1 + 31310 0.7 0.443157
Target:  5'- gCGGCGcGccGCGGGcGGCGGcCUGGUggagCGc -3'
miRNA:   3'- -GCCGC-Ca-CGCCCuUCGCC-GACCAa---GC- -5'
6355 3' -60.6 NC_001847.1 + 31419 0.67 0.624224
Target:  5'- cCGGCGccgGCGGGcGGCGGCcGGcggccgCGg -3'
miRNA:   3'- -GCCGCca-CGCCCuUCGCCGaCCaa----GC- -5'
6355 3' -60.6 NC_001847.1 + 32030 0.69 0.507126
Target:  5'- cCGGCGGggcGCGGGGA-CGGCgcccgcgcgGGcUCGg -3'
miRNA:   3'- -GCCGCCa--CGCCCUUcGCCGa--------CCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 32140 0.66 0.713066
Target:  5'- gGGCGGggGCGGGGgcGGgGGCcccgGGggCc -3'
miRNA:   3'- gCCGCCa-CGCCCU--UCgCCGa---CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 32990 0.71 0.408705
Target:  5'- gGGCGGgcaggGCGGccGGAGCGGCcggGGggCGc -3'
miRNA:   3'- gCCGCCa----CGCC--CUUCGCCGa--CCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.