miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 3' -60.6 NC_001847.1 + 33161 0.66 0.673879
Target:  5'- gCGGCGGuUGCGccgcuGcAGCGGCUGGc-CGg -3'
miRNA:   3'- -GCCGCC-ACGCc----CuUCGCCGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 33500 0.75 0.240087
Target:  5'- gCGGCGGcGCGGGcGGCGGCgGGcgCc -3'
miRNA:   3'- -GCCGCCaCGCCCuUCGCCGaCCaaGc -5'
6355 3' -60.6 NC_001847.1 + 33562 0.7 0.43439
Target:  5'- aGGCGcacGCGGGggGCGuCUGGcgCGg -3'
miRNA:   3'- gCCGCca-CGCCCuuCGCcGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 34012 0.67 0.634173
Target:  5'- gCGGCGGUGCuGGGcacCGcGCUGGgccaggCGa -3'
miRNA:   3'- -GCCGCCACG-CCCuucGC-CGACCaa----GC- -5'
6355 3' -60.6 NC_001847.1 + 36182 0.67 0.633179
Target:  5'- gCGGCGGUGCGcGGcgaggccgcguacGAGgGGCUGcg-CGc -3'
miRNA:   3'- -GCCGCCACGC-CC-------------UUCgCCGACcaaGC- -5'
6355 3' -60.6 NC_001847.1 + 37040 0.68 0.591471
Target:  5'- gGGCucgcacucuagccuGG-GCuGGggGCGGCUGGUgcacgCGg -3'
miRNA:   3'- gCCG--------------CCaCGcCCuuCGCCGACCAa----GC- -5'
6355 3' -60.6 NC_001847.1 + 37159 0.67 0.624224
Target:  5'- gGGCGGc-CGGGAAGCGGCacc-UCGu -3'
miRNA:   3'- gCCGCCacGCCCUUCGCCGaccaAGC- -5'
6355 3' -60.6 NC_001847.1 + 37385 0.7 0.452024
Target:  5'- cCGGCGGUGCGcuGAcaacgaucAGCGuGCUGGcgCGc -3'
miRNA:   3'- -GCCGCCACGCc-CU--------UCGC-CGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 41827 0.7 0.452024
Target:  5'- gGGCGGcGCGGGucccAG-GGCUGGggCa -3'
miRNA:   3'- gCCGCCaCGCCCu---UCgCCGACCaaGc -5'
6355 3' -60.6 NC_001847.1 + 42727 0.68 0.574702
Target:  5'- gCGGCGG-GCGGccgcgcGGGCGGC-GGggCGg -3'
miRNA:   3'- -GCCGCCaCGCCc-----UUCGCCGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 42963 0.66 0.663981
Target:  5'- gCGGgGGggGCGGGccgccGGcCGGCccgGGUUCGc -3'
miRNA:   3'- -GCCgCCa-CGCCCu----UC-GCCGa--CCAAGC- -5'
6355 3' -60.6 NC_001847.1 + 43236 0.68 0.555118
Target:  5'- uGGCGGUGgGGGcgcgcGGGCGGCgcGGcgCc -3'
miRNA:   3'- gCCGCCACgCCC-----UUCGCCGa-CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 47049 0.66 0.673879
Target:  5'- -cGCGGUGCGuGucGCGGCcGGcgCGg -3'
miRNA:   3'- gcCGCCACGCcCuuCGCCGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 47553 0.69 0.526132
Target:  5'- aCGGCGGgcGCGGGGAGCccGGC-GGccgCGc -3'
miRNA:   3'- -GCCGCCa-CGCCCUUCG--CCGaCCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 52898 0.66 0.683744
Target:  5'- uGGCcaguccuaGGUccGCGGGcAGCGGCUcGGggCGc -3'
miRNA:   3'- gCCG--------CCA--CGCCCuUCGCCGA-CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 53706 0.68 0.574702
Target:  5'- gGGCGaGUcuGUGGGccGGCGGCUGGcgCu -3'
miRNA:   3'- gCCGC-CA--CGCCCu-UCGCCGACCaaGc -5'
6355 3' -60.6 NC_001847.1 + 53817 0.72 0.360286
Target:  5'- aGGCGuGUcGCGGGc-GCGGCUGGcggCGg -3'
miRNA:   3'- gCCGC-CA-CGCCCuuCGCCGACCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 54386 0.67 0.635168
Target:  5'- gCGGCGGgcggccgcgggcgagGCGGGcgccgccGCGGUUGGccUCGg -3'
miRNA:   3'- -GCCGCCa--------------CGCCCuu-----CGCCGACCa-AGC- -5'
6355 3' -60.6 NC_001847.1 + 54496 0.72 0.3728
Target:  5'- aCGGCGGcgccggggccgggGUGGGggGCGG-UGGggCGg -3'
miRNA:   3'- -GCCGCCa------------CGCCCuuCGCCgACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 55083 0.77 0.184457
Target:  5'- uGGCGGccGCGGGggGCGGgUGGg-CGg -3'
miRNA:   3'- gCCGCCa-CGCCCuuCGCCgACCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.