miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 3' -60.6 NC_001847.1 + 84459 0.69 0.497733
Target:  5'- gCGGgGG-GUGGGGAGCGGggGGgggggCGg -3'
miRNA:   3'- -GCCgCCaCGCCCUUCGCCgaCCaa---GC- -5'
6355 3' -60.6 NC_001847.1 + 31298 0.69 0.497733
Target:  5'- aGGCGGgcGCGGGGAGCGggcucuGCUGcGUguuuUCGc -3'
miRNA:   3'- gCCGCCa-CGCCCUUCGC------CGAC-CA----AGC- -5'
6355 3' -60.6 NC_001847.1 + 32030 0.69 0.507126
Target:  5'- cCGGCGGggcGCGGGGA-CGGCgcccgcgcgGGcUCGg -3'
miRNA:   3'- -GCCGCCa--CGCCCUUcGCCGa--------CCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 11665 0.69 0.507126
Target:  5'- gCGGCGGUGaaGGggGCG-CUGcaUCGg -3'
miRNA:   3'- -GCCGCCACgcCCuuCGCcGACcaAGC- -5'
6355 3' -60.6 NC_001847.1 + 17147 0.69 0.507126
Target:  5'- aGGuUGG-GCGGGuGGGCGGUUGGcgUCGc -3'
miRNA:   3'- gCC-GCCaCGCCC-UUCGCCGACCa-AGC- -5'
6355 3' -60.6 NC_001847.1 + 134843 0.69 0.507126
Target:  5'- cCGGCGGggcGCGGGGA-CGGCgcccgcgcgGGcUCGg -3'
miRNA:   3'- -GCCGCCa--CGCCCUUcGCCGa--------CCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 87899 0.69 0.520401
Target:  5'- gGGCGGggcuuugcacagggGCGGGGcguGgGGCUGGgcgCGg -3'
miRNA:   3'- gCCGCCa-------------CGCCCUu--CgCCGACCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 47553 0.69 0.526132
Target:  5'- aCGGCGGgcGCGGGGAGCccGGC-GGccgCGc -3'
miRNA:   3'- -GCCGCCa-CGCCCUUCG--CCGaCCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 103279 0.69 0.534772
Target:  5'- gCGGCGGcgGCGGcGGcagcagcGGCGGCggcGGggCGg -3'
miRNA:   3'- -GCCGCCa-CGCC-CU-------UCGCCGa--CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 466 0.69 0.534772
Target:  5'- gCGGCGGcgGCGGcGGcagcagcGGCGGCggcGGggCGg -3'
miRNA:   3'- -GCCGCCa-CGCC-CU-------UCGCCGa--CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 27748 0.69 0.535735
Target:  5'- gCGGCGGUugcgGCGGGggGCuGUgcGGggCGu -3'
miRNA:   3'- -GCCGCCA----CGCCCuuCGcCGa-CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 120933 0.68 0.545399
Target:  5'- gGGCGGgcgcGCGGGcguGGUGGCUGauGUgggCGg -3'
miRNA:   3'- gCCGCCa---CGCCCu--UCGCCGAC--CAa--GC- -5'
6355 3' -60.6 NC_001847.1 + 43236 0.68 0.555118
Target:  5'- uGGCGGUGgGGGcgcgcGGGCGGCgcGGcgCc -3'
miRNA:   3'- gCCGCCACgCCC-----UUCGCCGa-CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 86379 0.68 0.555118
Target:  5'- gCGGCGGgccgcggcgGCGGGcgcGCGGCUGagUCa -3'
miRNA:   3'- -GCCGCCa--------CGCCCuu-CGCCGACcaAGc -5'
6355 3' -60.6 NC_001847.1 + 115274 0.68 0.555118
Target:  5'- uGGCGGUgGCGGGcuAAGCcGGCgcccccgGGcgCGg -3'
miRNA:   3'- gCCGCCA-CGCCC--UUCG-CCGa------CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 96366 0.68 0.563909
Target:  5'- cCGGCGGUggcaaugGCGGGGccGGCGGC-GGcaauggCGg -3'
miRNA:   3'- -GCCGCCA-------CGCCCU--UCGCCGaCCaa----GC- -5'
6355 3' -60.6 NC_001847.1 + 42727 0.68 0.574702
Target:  5'- gCGGCGG-GCGGccgcgcGGGCGGC-GGggCGg -3'
miRNA:   3'- -GCCGCCaCGCCc-----UUCGCCGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 88267 0.68 0.574702
Target:  5'- gGGCGGggacGgGGGGAGCGcuucgccuGCUGGgcCGa -3'
miRNA:   3'- gCCGCCa---CgCCCUUCGC--------CGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 53706 0.68 0.574702
Target:  5'- gGGCGaGUcuGUGGGccGGCGGCUGGcgCu -3'
miRNA:   3'- gCCGC-CA--CGCCCu-UCGCCGACCaaGc -5'
6355 3' -60.6 NC_001847.1 + 8986 0.68 0.584554
Target:  5'- gGGCGGgcaGaCGGGGguGGgGGCUGGgugggCGg -3'
miRNA:   3'- gCCGCCa--C-GCCCU--UCgCCGACCaa---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.