miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 3' -60.6 NC_001847.1 + 31419 0.67 0.624224
Target:  5'- cCGGCGccgGCGGGcGGCGGCcGGcggccgCGg -3'
miRNA:   3'- -GCCGCca-CGCCCuUCGCCGaCCaa----GC- -5'
6355 3' -60.6 NC_001847.1 + 119527 0.67 0.634173
Target:  5'- gCGGCGGccGCGGccGGCaGGCUGGg--- -3'
miRNA:   3'- -GCCGCCa-CGCCcuUCG-CCGACCaagc -5'
6355 3' -60.6 NC_001847.1 + 4803 0.67 0.633179
Target:  5'- gCGGUGGccUGgGGGAgacgggguaggggGGCGGgUGGgUCGg -3'
miRNA:   3'- -GCCGCC--ACgCCCU-------------UCGCCgACCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 8463 0.67 0.644121
Target:  5'- aGGCGGcgccggGCcGGggGCGGCgcucggccgGGggCGg -3'
miRNA:   3'- gCCGCCa-----CGcCCuuCGCCGa--------CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 4871 0.67 0.634173
Target:  5'- gGGgGGgcgGCGGGcAGCGGCaGGg--- -3'
miRNA:   3'- gCCgCCa--CGCCCuUCGCCGaCCaagc -5'
6355 3' -60.6 NC_001847.1 + 54386 0.67 0.635168
Target:  5'- gCGGCGGgcggccgcgggcgagGCGGGcgccgccGCGGUUGGccUCGg -3'
miRNA:   3'- -GCCGCCa--------------CGCCCuu-----CGCCGACCa-AGC- -5'
6355 3' -60.6 NC_001847.1 + 115668 0.67 0.634173
Target:  5'- -cGCGuccGUGCGGGuGAGCGGCUGcg-CGg -3'
miRNA:   3'- gcCGC---CACGCCC-UUCGCCGACcaaGC- -5'
6355 3' -60.6 NC_001847.1 + 111799 0.68 0.584554
Target:  5'- gGGCGGgcaGaCGGGGguGGgGGCUGGgugggCGg -3'
miRNA:   3'- gCCGCCa--C-GCCCU--UCgCCGACCaa---GC- -5'
6355 3' -60.6 NC_001847.1 + 86379 0.68 0.555118
Target:  5'- gCGGCGGgccgcggcgGCGGGcgcGCGGCUGagUCa -3'
miRNA:   3'- -GCCGCCa--------CGCCCuu-CGCCGACcaAGc -5'
6355 3' -60.6 NC_001847.1 + 37040 0.68 0.591471
Target:  5'- gGGCucgcacucuagccuGG-GCuGGggGCGGCUGGUgcacgCGg -3'
miRNA:   3'- gCCG--------------CCaCGcCCuuCGCCGACCAa----GC- -5'
6355 3' -60.6 NC_001847.1 + 43236 0.68 0.555118
Target:  5'- uGGCGGUGgGGGcgcgcGGGCGGCgcGGcgCc -3'
miRNA:   3'- gCCGCCACgCCC-----UUCGCCGa-CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 53706 0.68 0.574702
Target:  5'- gGGCGaGUcuGUGGGccGGCGGCUGGcgCu -3'
miRNA:   3'- gCCGC-CA--CGCCCu-UCGCCGACCaaGc -5'
6355 3' -60.6 NC_001847.1 + 128804 0.68 0.584554
Target:  5'- gGGCGG-GCGGGcGGGCGcGCaGGcgCGc -3'
miRNA:   3'- gCCGCCaCGCCC-UUCGC-CGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 96366 0.68 0.563909
Target:  5'- cCGGCGGUggcaaugGCGGGGccGGCGGC-GGcaauggCGg -3'
miRNA:   3'- -GCCGCCA-------CGCCCU--UCGCCGaCCaa----GC- -5'
6355 3' -60.6 NC_001847.1 + 88267 0.68 0.574702
Target:  5'- gGGCGGggacGgGGGGAGCGcuucgccuGCUGGgcCGa -3'
miRNA:   3'- gCCGCCa---CgCCCUUCGC--------CGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 19801 0.68 0.594439
Target:  5'- uCGGCGGagGCGGu-GGCGGUggcGGggCGg -3'
miRNA:   3'- -GCCGCCa-CGCCcuUCGCCGa--CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 42727 0.68 0.574702
Target:  5'- gCGGCGG-GCGGccgcgcGGGCGGC-GGggCGg -3'
miRNA:   3'- -GCCGCCaCGCCc-----UUCGCCGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 8986 0.68 0.584554
Target:  5'- gGGCGGgcaGaCGGGGguGGgGGCUGGgugggCGg -3'
miRNA:   3'- gCCGCCa--C-GCCCU--UCgCCGACCaa---GC- -5'
6355 3' -60.6 NC_001847.1 + 25991 0.68 0.584554
Target:  5'- gGGCGG-GCGGGcGGGCGcGCaGGcgCGc -3'
miRNA:   3'- gCCGCCaCGCCC-UUCGC-CGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 96639 0.68 0.584554
Target:  5'- cCGGCGGguacgcgucgUGCGcGGggGCcGGCgGGUaCGc -3'
miRNA:   3'- -GCCGCC----------ACGC-CCuuCG-CCGaCCAaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.