miRNA display CGI


Results 41 - 60 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 3' -60.6 NC_001847.1 + 107616 0.67 0.633179
Target:  5'- gCGGUGGccUGgGGGAgacgggguaggggGGCGGgUGGgUCGg -3'
miRNA:   3'- -GCCGCC--ACgCCCU-------------UCGCCgACCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 134843 0.69 0.507126
Target:  5'- cCGGCGGggcGCGGGGA-CGGCgcccgcgcgGGcUCGg -3'
miRNA:   3'- -GCCGCCa--CGCCCUUcGCCGa--------CCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 59567 0.71 0.392118
Target:  5'- gGGCGGUGCcggcGGAAGCucuGGCUGGcgugCGc -3'
miRNA:   3'- gCCGCCACGc---CCUUCG---CCGACCaa--GC- -5'
6355 3' -60.6 NC_001847.1 + 36182 0.67 0.633179
Target:  5'- gCGGCGGUGCGcGGcgaggccgcguacGAGgGGCUGcg-CGc -3'
miRNA:   3'- -GCCGCCACGC-CC-------------UUCgCCGACcaaGC- -5'
6355 3' -60.6 NC_001847.1 + 17890 0.71 0.383183
Target:  5'- gGGCGGgGCGGGcGGCGGCgugcuguUGGUa-- -3'
miRNA:   3'- gCCGCCaCGCCCuUCGCCG-------ACCAagc -5'
6355 3' -60.6 NC_001847.1 + 4555 0.66 0.713066
Target:  5'- gGGUGGcgcgGCGuGGAAGUGGaagUGGUgCGg -3'
miRNA:   3'- gCCGCCa---CGC-CCUUCGCCg--ACCAaGC- -5'
6355 3' -60.6 NC_001847.1 + 21864 0.7 0.452024
Target:  5'- aGGUGGUGCGGGGgcugcGGCGcGCUGc--CGa -3'
miRNA:   3'- gCCGCCACGCCCU-----UCGC-CGACcaaGC- -5'
6355 3' -60.6 NC_001847.1 + 18191 0.66 0.703346
Target:  5'- uGGCGGacgcGCGGcGAGGUcucgGGCUGGcggUCu -3'
miRNA:   3'- gCCGCCa---CGCC-CUUCG----CCGACCa--AGc -5'
6355 3' -60.6 NC_001847.1 + 102678 0.66 0.703346
Target:  5'- gGGCGGggggGCGGGGcGGgGGCaGGgcgcCGg -3'
miRNA:   3'- gCCGCCa---CGCCCU-UCgCCGaCCaa--GC- -5'
6355 3' -60.6 NC_001847.1 + 33161 0.66 0.673879
Target:  5'- gCGGCGGuUGCGccgcuGcAGCGGCUGGc-CGg -3'
miRNA:   3'- -GCCGCC-ACGCc----CuUCGCCGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 121363 0.66 0.663981
Target:  5'- gCGGCGGgcgggGUGGGGAGCGGgcaaggCGg -3'
miRNA:   3'- -GCCGCCa----CGCCCUUCGCCgaccaaGC- -5'
6355 3' -60.6 NC_001847.1 + 111276 0.67 0.644121
Target:  5'- aGGCGGcgccggGCcGGggGCGGCgcucggccgGGggCGg -3'
miRNA:   3'- gCCGCCa-----CGcCCuuCGCCGa--------CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 34012 0.67 0.634173
Target:  5'- gCGGCGGUGCuGGGcacCGcGCUGGgccaggCGa -3'
miRNA:   3'- -GCCGCCACG-CCCuucGC-CGACCaa----GC- -5'
6355 3' -60.6 NC_001847.1 + 83186 0.67 0.614281
Target:  5'- uGGCGGacgGCGGGggGCGcGCagacgagcuUGGgccCGu -3'
miRNA:   3'- gCCGCCa--CGCCCuuCGC-CG---------ACCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 128804 0.68 0.584554
Target:  5'- gGGCGG-GCGGGcGGGCGcGCaGGcgCGc -3'
miRNA:   3'- gCCGCCaCGCCC-UUCGC-CGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 43236 0.68 0.555118
Target:  5'- uGGCGGUGgGGGcgcgcGGGCGGCgcGGcgCc -3'
miRNA:   3'- gCCGCCACgCCC-----UUCGCCGa-CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 47553 0.69 0.526132
Target:  5'- aCGGCGGgcGCGGGGAGCccGGC-GGccgCGc -3'
miRNA:   3'- -GCCGCCa-CGCCCUUCG--CCGaCCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 84459 0.69 0.497733
Target:  5'- gCGGgGG-GUGGGGAGCGGggGGgggggCGg -3'
miRNA:   3'- -GCCgCCaCGCCCUUCGCCgaCCaa---GC- -5'
6355 3' -60.6 NC_001847.1 + 69467 0.7 0.479187
Target:  5'- gCGGCGGcgGCGGGGcuccugcuGGCcgGGCUGGcggCGu -3'
miRNA:   3'- -GCCGCCa-CGCCCU--------UCG--CCGACCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 37385 0.7 0.452024
Target:  5'- cCGGCGGUGCGcuGAcaacgaucAGCGuGCUGGcgCGc -3'
miRNA:   3'- -GCCGCCACGCc-CU--------UCGC-CGACCaaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.