miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 3' -60.6 NC_001847.1 + 17890 0.71 0.383183
Target:  5'- gGGCGGgGCGGGcGGCGGCgugcuguUGGUa-- -3'
miRNA:   3'- gCCGCCaCGCCCuUCGCCG-------ACCAagc -5'
6355 3' -60.6 NC_001847.1 + 59567 0.71 0.392118
Target:  5'- gGGCGGUGCcggcGGAAGCucuGGCUGGcgugCGc -3'
miRNA:   3'- gCCGCCACGc---CCUUCG---CCGACCaa--GC- -5'
6355 3' -60.6 NC_001847.1 + 32990 0.71 0.408705
Target:  5'- gGGCGGgcaggGCGGccGGAGCGGCcggGGggCGc -3'
miRNA:   3'- gCCGCCa----CGCC--CUUCGCCGa--CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 12958 0.71 0.425724
Target:  5'- gCGGCGG-GCcGGggGUGGCccggucgcUGGUUCc -3'
miRNA:   3'- -GCCGCCaCGcCCuuCGCCG--------ACCAAGc -5'
6355 3' -60.6 NC_001847.1 + 33562 0.7 0.43439
Target:  5'- aGGCGcacGCGGGggGCGuCUGGcgCGg -3'
miRNA:   3'- gCCGCca-CGCCCuuCGCcGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 134123 0.7 0.443157
Target:  5'- gCGGCGcGccGCGGGcGGCGGcCUGGUggagCGc -3'
miRNA:   3'- -GCCGC-Ca-CGCCCuUCGCC-GACCAa---GC- -5'
6355 3' -60.6 NC_001847.1 + 31310 0.7 0.443157
Target:  5'- gCGGCGcGccGCGGGcGGCGGcCUGGUggagCGc -3'
miRNA:   3'- -GCCGC-Ca-CGCCCuUCGCC-GACCAa---GC- -5'
6355 3' -60.6 NC_001847.1 + 21864 0.7 0.452024
Target:  5'- aGGUGGUGCGGGGgcugcGGCGcGCUGc--CGa -3'
miRNA:   3'- gCCGCCACGCCCU-----UCGC-CGACcaaGC- -5'
6355 3' -60.6 NC_001847.1 + 37385 0.7 0.452024
Target:  5'- cCGGCGGUGCGcuGAcaacgaucAGCGuGCUGGcgCGc -3'
miRNA:   3'- -GCCGCCACGCc-CU--------UCGC-CGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 41827 0.7 0.452024
Target:  5'- gGGCGGcGCGGGucccAG-GGCUGGggCa -3'
miRNA:   3'- gCCGCCaCGCCCu---UCgCCGACCaaGc -5'
6355 3' -60.6 NC_001847.1 + 11782 0.7 0.452024
Target:  5'- gGGCGG-GCGGGcAGUGGCgcuUUCGa -3'
miRNA:   3'- gCCGCCaCGCCCuUCGCCGaccAAGC- -5'
6355 3' -60.6 NC_001847.1 + 66495 0.7 0.460986
Target:  5'- gGGCGGggagGCGGuGAAGUuugGGCUGGa--- -3'
miRNA:   3'- gCCGCCa---CGCC-CUUCG---CCGACCaagc -5'
6355 3' -60.6 NC_001847.1 + 99803 0.7 0.470042
Target:  5'- -uGUGGUGCGGGGucggAGCGGCcgGGggCc -3'
miRNA:   3'- gcCGCCACGCCCU----UCGCCGa-CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 27528 0.7 0.470952
Target:  5'- gCGGCGGggacgcccgagaacgGCGGcGcGGCGGCUGGg--- -3'
miRNA:   3'- -GCCGCCa--------------CGCC-CuUCGCCGACCaagc -5'
6355 3' -60.6 NC_001847.1 + 69467 0.7 0.479187
Target:  5'- gCGGCGGcgGCGGGGcuccugcuGGCcgGGCUGGcggCGu -3'
miRNA:   3'- -GCCGCCa-CGCCCU--------UCG--CCGACCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 29079 0.7 0.479187
Target:  5'- uGGCGGUgGCGGGcGGCGuGCUG-UUUa -3'
miRNA:   3'- gCCGCCA-CGCCCuUCGC-CGACcAAGc -5'
6355 3' -60.6 NC_001847.1 + 95767 0.69 0.488418
Target:  5'- gCGGCgcgggccgcucuGGcGCGGGggGCGGCgcgGGcgCa -3'
miRNA:   3'- -GCCG------------CCaCGCCCuuCGCCGa--CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 7253 0.69 0.488418
Target:  5'- uGGCuGUGCGGGc-GCGGCgGGggCa -3'
miRNA:   3'- gCCGcCACGCCCuuCGCCGaCCaaGc -5'
6355 3' -60.6 NC_001847.1 + 96306 0.69 0.488418
Target:  5'- gCGGCGGcaaugGCGGGGccGGCGGCggcaauggcgGGgcCGg -3'
miRNA:   3'- -GCCGCCa----CGCCCU--UCGCCGa---------CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 31298 0.69 0.497733
Target:  5'- aGGCGGgcGCGGGGAGCGggcucuGCUGcGUguuuUCGc -3'
miRNA:   3'- gCCGCCa-CGCCCUUCGC------CGAC-CA----AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.