Results 41 - 60 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6355 | 3' | -60.6 | NC_001847.1 | + | 37159 | 0.67 | 0.624224 |
Target: 5'- gGGCGGc-CGGGAAGCGGCacc-UCGu -3' miRNA: 3'- gCCGCCacGCCCUUCGCCGaccaAGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 134387 | 0.67 | 0.624224 |
Target: 5'- aGGCGGUGCaGGccAGUGGUgGGcUCGu -3' miRNA: 3'- gCCGCCACGcCCu-UCGCCGaCCaAGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 64 | 0.67 | 0.624224 |
Target: 5'- gCGGCGG-GCGGGGgcggGGUGGgggaUGGgcgCGg -3' miRNA: 3'- -GCCGCCaCGCCCU----UCGCCg---ACCaa-GC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 134232 | 0.67 | 0.624224 |
Target: 5'- cCGGCGccgGCGGGcGGCGGCcGGcggccgCGg -3' miRNA: 3'- -GCCGCca-CGCCCuUCGCCGaCCaa----GC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 86479 | 0.67 | 0.622235 |
Target: 5'- aCGGCGGcacggacgacgaggcUGCGGGGgcGGCGGCgccccgccgccgcgGcGUUCa -3' miRNA: 3'- -GCCGCC---------------ACGCCCU--UCGCCGa-------------C-CAAGc -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 83186 | 0.67 | 0.614281 |
Target: 5'- uGGCGGacgGCGGGggGCGcGCagacgagcuUGGgccCGu -3' miRNA: 3'- gCCGCCa--CGCCCuuCGC-CG---------ACCaa-GC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 10911 | 0.67 | 0.614281 |
Target: 5'- uGGCGGcGCGGuacuaccgcGAGGCgagccGGCUGGcgCGg -3' miRNA: 3'- gCCGCCaCGCC---------CUUCG-----CCGACCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 19801 | 0.68 | 0.594439 |
Target: 5'- uCGGCGGagGCGGu-GGCGGUggcGGggCGg -3' miRNA: 3'- -GCCGCCa-CGCCcuUCGCCGa--CCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 93750 | 0.68 | 0.594439 |
Target: 5'- cCGcGCGGUcCGGG-AGCGGCUGag-CGa -3' miRNA: 3'- -GC-CGCCAcGCCCuUCGCCGACcaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 95686 | 0.68 | 0.594439 |
Target: 5'- gCGGCgcgggccgcucuGGcGCGGGggGCGGCgcgggccgcucUGGcgCGg -3' miRNA: 3'- -GCCG------------CCaCGCCCuuCGCCG-----------ACCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 37040 | 0.68 | 0.591471 |
Target: 5'- gGGCucgcacucuagccuGG-GCuGGggGCGGCUGGUgcacgCGg -3' miRNA: 3'- gCCG--------------CCaCGcCCuuCGCCGACCAa----GC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 111799 | 0.68 | 0.584554 |
Target: 5'- gGGCGGgcaGaCGGGGguGGgGGCUGGgugggCGg -3' miRNA: 3'- gCCGCCa--C-GCCCU--UCgCCGACCaa---GC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 96639 | 0.68 | 0.584554 |
Target: 5'- cCGGCGGguacgcgucgUGCGcGGggGCcGGCgGGUaCGc -3' miRNA: 3'- -GCCGCC----------ACGC-CCuuCG-CCGaCCAaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 8986 | 0.68 | 0.584554 |
Target: 5'- gGGCGGgcaGaCGGGGguGGgGGCUGGgugggCGg -3' miRNA: 3'- gCCGCCa--C-GCCCU--UCgCCGACCaa---GC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 25991 | 0.68 | 0.584554 |
Target: 5'- gGGCGG-GCGGGcGGGCGcGCaGGcgCGc -3' miRNA: 3'- gCCGCCaCGCCC-UUCGC-CGaCCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 128804 | 0.68 | 0.584554 |
Target: 5'- gGGCGG-GCGGGcGGGCGcGCaGGcgCGc -3' miRNA: 3'- gCCGCCaCGCCC-UUCGC-CGaCCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 42727 | 0.68 | 0.574702 |
Target: 5'- gCGGCGG-GCGGccgcgcGGGCGGC-GGggCGg -3' miRNA: 3'- -GCCGCCaCGCCc-----UUCGCCGaCCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 53706 | 0.68 | 0.574702 |
Target: 5'- gGGCGaGUcuGUGGGccGGCGGCUGGcgCu -3' miRNA: 3'- gCCGC-CA--CGCCCu-UCGCCGACCaaGc -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 88267 | 0.68 | 0.574702 |
Target: 5'- gGGCGGggacGgGGGGAGCGcuucgccuGCUGGgcCGa -3' miRNA: 3'- gCCGCCa---CgCCCUUCGC--------CGACCaaGC- -5' |
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6355 | 3' | -60.6 | NC_001847.1 | + | 96366 | 0.68 | 0.563909 |
Target: 5'- cCGGCGGUggcaaugGCGGGGccGGCGGC-GGcaauggCGg -3' miRNA: 3'- -GCCGCCA-------CGCCCU--UCGCCGaCCaa----GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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