miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 3' -60.6 NC_001847.1 + 108035 0.72 0.337622
Target:  5'- gCGGCGGccgGCGGGGcgcgcGCGGCaaagGGUUUGc -3'
miRNA:   3'- -GCCGCCa--CGCCCUu----CGCCGa---CCAAGC- -5'
6355 3' -60.6 NC_001847.1 + 107684 0.67 0.634173
Target:  5'- gGGgGGgcgGCGGGcAGCGGCaGGg--- -3'
miRNA:   3'- gCCgCCa--CGCCCuUCGCCGaCCaagc -5'
6355 3' -60.6 NC_001847.1 + 107616 0.67 0.633179
Target:  5'- gCGGUGGccUGgGGGAgacgggguaggggGGCGGgUGGgUCGg -3'
miRNA:   3'- -GCCGCC--ACgCCCU-------------UCGCCgACCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 103279 0.69 0.534772
Target:  5'- gCGGCGGcgGCGGcGGcagcagcGGCGGCggcGGggCGg -3'
miRNA:   3'- -GCCGCCa-CGCC-CU-------UCGCCGa--CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 103239 0.72 0.345059
Target:  5'- gGGCGG-GCGGGcGGCGGC-GGcggCGg -3'
miRNA:   3'- gCCGCCaCGCCCuUCGCCGaCCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 102678 0.66 0.703346
Target:  5'- gGGCGGggggGCGGGGcGGgGGCaGGgcgcCGg -3'
miRNA:   3'- gCCGCCa---CGCCCU-UCgCCGaCCaa--GC- -5'
6355 3' -60.6 NC_001847.1 + 100543 0.66 0.722721
Target:  5'- gGGUGG-GCGGGGAGcCGGCcGcggCGa -3'
miRNA:   3'- gCCGCCaCGCCCUUC-GCCGaCcaaGC- -5'
6355 3' -60.6 NC_001847.1 + 100506 0.72 0.375974
Target:  5'- aCGGCGGUGCGGuGuGGUgGGCUGcGggUCGc -3'
miRNA:   3'- -GCCGCCACGCC-CuUCG-CCGAC-Ca-AGC- -5'
6355 3' -60.6 NC_001847.1 + 99803 0.7 0.470042
Target:  5'- -uGUGGUGCGGGGucggAGCGGCcgGGggCc -3'
miRNA:   3'- gcCGCCACGCCCU----UCGCCGa-CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 97723 0.66 0.722721
Target:  5'- uCGGCGGggGCagaagcGGAAGCGGC-GGcggCGg -3'
miRNA:   3'- -GCCGCCa-CGc-----CCUUCGCCGaCCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 96639 0.68 0.584554
Target:  5'- cCGGCGGguacgcgucgUGCGcGGggGCcGGCgGGUaCGc -3'
miRNA:   3'- -GCCGCC----------ACGC-CCuuCG-CCGaCCAaGC- -5'
6355 3' -60.6 NC_001847.1 + 96411 0.75 0.229022
Target:  5'- gCGGCGGcaaugGCGGGGccGGCGGCaGGcgCGg -3'
miRNA:   3'- -GCCGCCa----CGCCCU--UCGCCGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 96366 0.68 0.563909
Target:  5'- cCGGCGGUggcaaugGCGGGGccGGCGGC-GGcaauggCGg -3'
miRNA:   3'- -GCCGCCA-------CGCCCU--UCGCCGaCCaa----GC- -5'
6355 3' -60.6 NC_001847.1 + 96306 0.69 0.488418
Target:  5'- gCGGCGGcaaugGCGGGGccGGCGGCggcaauggcgGGgcCGg -3'
miRNA:   3'- -GCCGCCa----CGCCCU--UCGCCGa---------CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 95767 0.69 0.488418
Target:  5'- gCGGCgcgggccgcucuGGcGCGGGggGCGGCgcgGGcgCa -3'
miRNA:   3'- -GCCG------------CCaCGCCCuuCGCCGa--CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 95686 0.68 0.594439
Target:  5'- gCGGCgcgggccgcucuGGcGCGGGggGCGGCgcgggccgcucUGGcgCGg -3'
miRNA:   3'- -GCCG------------CCaCGCCCuuCGCCG-----------ACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 95635 0.72 0.375974
Target:  5'- uGGCGGgccgcucuggcGCGGGggGCGGCgcgggccgcucUGGcgCGg -3'
miRNA:   3'- gCCGCCa----------CGCCCuuCGCCG-----------ACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 93750 0.68 0.594439
Target:  5'- cCGcGCGGUcCGGG-AGCGGCUGag-CGa -3'
miRNA:   3'- -GC-CGCCAcGCCCuUCGCCGACcaaGC- -5'
6355 3' -60.6 NC_001847.1 + 88267 0.68 0.574702
Target:  5'- gGGCGGggacGgGGGGAGCGcuucgccuGCUGGgcCGa -3'
miRNA:   3'- gCCGCCa---CgCCCUUCGC--------CGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 87899 0.69 0.520401
Target:  5'- gGGCGGggcuuugcacagggGCGGGGcguGgGGCUGGgcgCGg -3'
miRNA:   3'- gCCGCCa-------------CGCCCUu--CgCCGACCaa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.