miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6355 3' -60.6 NC_001847.1 + 134953 0.66 0.713066
Target:  5'- gGGCGGggGCGGGGgcGGgGGCcccgGGggCc -3'
miRNA:   3'- gCCGCCa-CGCCCU--UCgCCGa---CCaaGc -5'
6355 3' -60.6 NC_001847.1 + 134843 0.69 0.507126
Target:  5'- cCGGCGGggcGCGGGGA-CGGCgcccgcgcgGGcUCGg -3'
miRNA:   3'- -GCCGCCa--CGCCCUUcGCCGa--------CCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 134387 0.67 0.624224
Target:  5'- aGGCGGUGCaGGccAGUGGUgGGcUCGu -3'
miRNA:   3'- gCCGCCACGcCCu-UCGCCGaCCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 134232 0.67 0.624224
Target:  5'- cCGGCGccgGCGGGcGGCGGCcGGcggccgCGg -3'
miRNA:   3'- -GCCGCca-CGCCCuUCGCCGaCCaa----GC- -5'
6355 3' -60.6 NC_001847.1 + 134123 0.7 0.443157
Target:  5'- gCGGCGcGccGCGGGcGGCGGcCUGGUggagCGc -3'
miRNA:   3'- -GCCGC-Ca-CGCCCuUCGCC-GACCAa---GC- -5'
6355 3' -60.6 NC_001847.1 + 131439 0.73 0.323098
Target:  5'- gCGGCGGccGCGGGGcccGCGGCcGuGUUCGu -3'
miRNA:   3'- -GCCGCCa-CGCCCUu--CGCCGaC-CAAGC- -5'
6355 3' -60.6 NC_001847.1 + 130892 0.72 0.368072
Target:  5'- -aGCGGggacugagGCGGGggGCGGC-GGUgcccUCGg -3'
miRNA:   3'- gcCGCCa-------CGCCCuuCGCCGaCCA----AGC- -5'
6355 3' -60.6 NC_001847.1 + 128804 0.68 0.584554
Target:  5'- gGGCGG-GCGGGcGGGCGcGCaGGcgCGc -3'
miRNA:   3'- gCCGCCaCGCCC-UUCGC-CGaCCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 124456 1.08 0.001296
Target:  5'- cCGGCGGUGCGGGAAGCGGCUGGUUCGc -3'
miRNA:   3'- -GCCGCCACGCCCUUCGCCGACCAAGC- -5'
6355 3' -60.6 NC_001847.1 + 121363 0.66 0.663981
Target:  5'- gCGGCGGgcgggGUGGGGAGCGGgcaaggCGg -3'
miRNA:   3'- -GCCGCCa----CGCCCUUCGCCgaccaaGC- -5'
6355 3' -60.6 NC_001847.1 + 120933 0.68 0.545399
Target:  5'- gGGCGGgcgcGCGGGcguGGUGGCUGauGUgggCGg -3'
miRNA:   3'- gCCGCCa---CGCCCu--UCGCCGAC--CAa--GC- -5'
6355 3' -60.6 NC_001847.1 + 119527 0.67 0.634173
Target:  5'- gCGGCGGccGCGGccGGCaGGCUGGg--- -3'
miRNA:   3'- -GCCGCCa-CGCCcuUCG-CCGACCaagc -5'
6355 3' -60.6 NC_001847.1 + 116687 0.66 0.721759
Target:  5'- cCGGCGcUGCGGGcgcGGCaccgcacGGCUGGccgCGg -3'
miRNA:   3'- -GCCGCcACGCCCu--UCG-------CCGACCaa-GC- -5'
6355 3' -60.6 NC_001847.1 + 116164 0.67 0.654059
Target:  5'- uGGCGGccGCGGGcgccGCGGCcgcgcUGGUcgUCGc -3'
miRNA:   3'- gCCGCCa-CGCCCuu--CGCCG-----ACCA--AGC- -5'
6355 3' -60.6 NC_001847.1 + 115683 0.66 0.673879
Target:  5'- gGaGCGc-GCGGcGGAGCGGCUGGccCGg -3'
miRNA:   3'- gC-CGCcaCGCC-CUUCGCCGACCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 115668 0.67 0.634173
Target:  5'- -cGCGuccGUGCGGGuGAGCGGCUGcg-CGg -3'
miRNA:   3'- gcCGC---CACGCCC-UUCGCCGACcaaGC- -5'
6355 3' -60.6 NC_001847.1 + 115274 0.68 0.555118
Target:  5'- uGGCGGUgGCGGGcuAAGCcGGCgcccccgGGcgCGg -3'
miRNA:   3'- gCCGCCA-CGCCC--UUCG-CCGa------CCaaGC- -5'
6355 3' -60.6 NC_001847.1 + 112088 0.66 0.683744
Target:  5'- cCGGCGGUcCGGcGcaAGGUGGaCUGGcUCGa -3'
miRNA:   3'- -GCCGCCAcGCC-C--UUCGCC-GACCaAGC- -5'
6355 3' -60.6 NC_001847.1 + 111799 0.68 0.584554
Target:  5'- gGGCGGgcaGaCGGGGguGGgGGCUGGgugggCGg -3'
miRNA:   3'- gCCGCCa--C-GCCCU--UCgCCGACCaa---GC- -5'
6355 3' -60.6 NC_001847.1 + 111276 0.67 0.644121
Target:  5'- aGGCGGcgccggGCcGGggGCGGCgcucggccgGGggCGg -3'
miRNA:   3'- gCCGCCa-----CGcCCuuCGCCGa--------CCaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.