miRNA display CGI


Results 61 - 80 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 3321 0.74 0.150477
Target:  5'- gGGCgCCGCUGCcgccggcGCCGGCCuccggguaggccauGGGGGCg -3'
miRNA:   3'- aCUG-GGCGGCGaa-----CGGCCGG--------------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 101391 0.74 0.16308
Target:  5'- -uGCCCGCgGCgccGCCGGCaauCGGGGGUc -3'
miRNA:   3'- acUGGGCGgCGaa-CGGCCG---GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 64156 0.74 0.159163
Target:  5'- cGGCCCgccaugcagGCCGCUUGCgCGGac-GGGGCg -3'
miRNA:   3'- aCUGGG---------CGGCGAACG-GCCgguCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 123470 0.74 0.14792
Target:  5'- cGACggCCGCCGCggGCuCGGCU-GGGGCc -3'
miRNA:   3'- aCUG--GGCGGCGaaCG-GCCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 127327 0.74 0.151585
Target:  5'- cGACCggCGCCGaggcgGCCGGCugccgcggCAGGGGCg -3'
miRNA:   3'- aCUGG--GCGGCgaa--CGGCCG--------GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 106808 0.73 0.183986
Target:  5'- cGGCCgCGCUGCccGCCGGCgAGcGGCa -3'
miRNA:   3'- aCUGG-GCGGCGaaCGGCCGgUCcCCG- -5'
6359 5' -64.6 NC_001847.1 + 131652 0.73 0.171173
Target:  5'- gUGACggCGCCGCUgccGCCGGUCGGGGacGCc -3'
miRNA:   3'- -ACUGg-GCGGCGAa--CGGCCGGUCCC--CG- -5'
6359 5' -64.6 NC_001847.1 + 72029 0.73 0.179623
Target:  5'- cGACCCGUgCGCggcGgCGGCCccGGGGCg -3'
miRNA:   3'- aCUGGGCG-GCGaa-CgGCCGGu-CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 56790 0.73 0.188892
Target:  5'- -cGCCCGCCGUUcgucgcgcucacgggGCCGGCgCgccuGGGGGCg -3'
miRNA:   3'- acUGGGCGGCGAa--------------CGGCCG-G----UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 55508 0.73 0.175353
Target:  5'- gGGCCCuGCUGCUggcggcGCCcGCCGcGGGGCg -3'
miRNA:   3'- aCUGGG-CGGCGAa-----CGGcCGGU-CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 65110 0.73 0.171173
Target:  5'- cGAgCCGCgGCUcgGCUGGCgGuGGGGCu -3'
miRNA:   3'- aCUgGGCGgCGAa-CGGCCGgU-CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 74272 0.73 0.175353
Target:  5'- gGGCCCGCgCGCgcgcucgcGCUGGCCucGGcGGGCg -3'
miRNA:   3'- aCUGGGCG-GCGaa------CGGCCGG--UC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 9628 0.73 0.187095
Target:  5'- -cGCCCGCCGCcgcGCCGGCCcGccgcucgagcagccGGGCg -3'
miRNA:   3'- acUGGGCGGCGaa-CGGCCGGuC--------------CCCG- -5'
6359 5' -64.6 NC_001847.1 + 3116 0.73 0.192992
Target:  5'- cGGCCCGCCGCg-GCCGagagcaccgggaGCCcGGcGGCg -3'
miRNA:   3'- aCUGGGCGGCGaaCGGC------------CGGuCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 60171 0.73 0.175353
Target:  5'- -cGCCCGCgaGCgUGUCGGCCAGuugcGGGCa -3'
miRNA:   3'- acUGGGCGg-CGaACGGCCGGUC----CCCG- -5'
6359 5' -64.6 NC_001847.1 + 11315 0.73 0.179623
Target:  5'- -cGCCCGCCGag-GCCGGCgGGcGGCu -3'
miRNA:   3'- acUGGGCGGCgaaCGGCCGgUCcCCG- -5'
6359 5' -64.6 NC_001847.1 + 129 0.73 0.192992
Target:  5'- cGGcCCCGcCCGCggGCCucgggccccGGCCGGGGGg -3'
miRNA:   3'- aCU-GGGC-GGCGaaCGG---------CCGGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 109925 0.73 0.183986
Target:  5'- cGACgCCGaucaUGCUcuuUGCCGGCCGcgcgcGGGGCu -3'
miRNA:   3'- aCUG-GGCg---GCGA---ACGGCCGGU-----CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 28839 0.73 0.171173
Target:  5'- gUGACggCGCCGCUgccGCCGGUCGGGGacGCc -3'
miRNA:   3'- -ACUGg-GCGGCGAa--CGGCCGGUCCC--CG- -5'
6359 5' -64.6 NC_001847.1 + 76914 0.73 0.175353
Target:  5'- -cGCgCCGCCGC-UGCCGcCCGGcGGGCa -3'
miRNA:   3'- acUG-GGCGGCGaACGGCcGGUC-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.