miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 3' -56.7 NC_001847.1 + 126105 0.68 0.781678
Target:  5'- gGGGGCGGAGCaCaGGAgCuCGGGUgGGGu -3'
miRNA:   3'- -CCCCGUUUCG-GcUCUaG-GUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 23292 0.68 0.781678
Target:  5'- gGGGGCGGAGCaCaGGAgCuCGGGUgGGGu -3'
miRNA:   3'- -CCCCGUUUCG-GcUCUaG-GUCCAgCCU- -5'
6360 3' -56.7 NC_001847.1 + 76395 0.68 0.781678
Target:  5'- cGGGGgGGGcGCCGGGggCCGcGG-CGGGg -3'
miRNA:   3'- -CCCCgUUU-CGGCUCuaGGU-CCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 26508 0.68 0.772388
Target:  5'- cGGGCcu-GCCGGGcgCgGGGcCGGGg -3'
miRNA:   3'- cCCCGuuuCGGCUCuaGgUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 129321 0.68 0.772388
Target:  5'- cGGGCcu-GCCGGGcgCgGGGcCGGGg -3'
miRNA:   3'- cCCCGuuuCGGCUCuaGgUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 11302 0.68 0.766753
Target:  5'- cGGGGCcucAGGGCCGGGGcacuaccuccaacgCCAGGaCGGc -3'
miRNA:   3'- -CCCCG---UUUCGGCUCUa-------------GGUCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 8397 0.68 0.762972
Target:  5'- uGGGGCu--GCCGGGAUagCGGGagGGc -3'
miRNA:   3'- -CCCCGuuuCGGCUCUAg-GUCCagCCu -5'
6360 3' -56.7 NC_001847.1 + 77467 0.68 0.762972
Target:  5'- uGGGGCGGGcGCCGGGcgCCcGGccCGGc -3'
miRNA:   3'- -CCCCGUUU-CGGCUCuaGGuCCa-GCCu -5'
6360 3' -56.7 NC_001847.1 + 3970 0.68 0.762972
Target:  5'- cGGcGGCGAGggcGCCGGGggCCGGGcgcgCGGc -3'
miRNA:   3'- -CC-CCGUUU---CGGCUCuaGGUCCa---GCCu -5'
6360 3' -56.7 NC_001847.1 + 111210 0.68 0.762972
Target:  5'- uGGGGCu--GCCGGGAUagCGGGagGGc -3'
miRNA:   3'- -CCCCGuuuCGGCUCUAg-GUCCagCCu -5'
6360 3' -56.7 NC_001847.1 + 90 0.68 0.753441
Target:  5'- uGGGcGCGGAGCgCGAGGguaGGGUUGGc -3'
miRNA:   3'- -CCC-CGUUUCG-GCUCUaggUCCAGCCu -5'
6360 3' -56.7 NC_001847.1 + 33519 0.69 0.734068
Target:  5'- cGGGCGccGCCGcGGAggcgCCGGGcgCGGGc -3'
miRNA:   3'- cCCCGUuuCGGC-UCUa---GGUCCa-GCCU- -5'
6360 3' -56.7 NC_001847.1 + 15383 0.69 0.724245
Target:  5'- cGGGGCGgucggcgucgGGGCUGGGG-CCGGGuuUCGGc -3'
miRNA:   3'- -CCCCGU----------UUCGGCUCUaGGUCC--AGCCu -5'
6360 3' -56.7 NC_001847.1 + 95346 0.69 0.714343
Target:  5'- gGGGGCGcAGCCagGGGAgcggggCCAGG-CGGc -3'
miRNA:   3'- -CCCCGUuUCGG--CUCUa-----GGUCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 63114 0.69 0.714343
Target:  5'- cGGGGCcgccGCCGcgcacGGGUcgguugugcaCCAGGUCGGGc -3'
miRNA:   3'- -CCCCGuuu-CGGC-----UCUA----------GGUCCAGCCU- -5'
6360 3' -56.7 NC_001847.1 + 90860 0.69 0.694339
Target:  5'- cGGGGcCGGGGCUGGuGUCgAGGcCGGGg -3'
miRNA:   3'- -CCCC-GUUUCGGCUcUAGgUCCaGCCU- -5'
6360 3' -56.7 NC_001847.1 + 124220 0.7 0.684254
Target:  5'- cGGGCc-GGCCGAgGAUUCGGGcCGGc -3'
miRNA:   3'- cCCCGuuUCGGCU-CUAGGUCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 21407 0.7 0.684254
Target:  5'- cGGGCc-GGCCGAgGAUUCGGGcCGGc -3'
miRNA:   3'- cCCCGuuUCGGCU-CUAGGUCCaGCCu -5'
6360 3' -56.7 NC_001847.1 + 32138 0.7 0.663965
Target:  5'- gGGGGCGGGGgCGGGggCgGGGgcccCGGGg -3'
miRNA:   3'- -CCCCGUUUCgGCUCuaGgUCCa---GCCU- -5'
6360 3' -56.7 NC_001847.1 + 123561 0.7 0.663965
Target:  5'- cGGGGCuuGGGCCGGGG-CCgccgcgagcgGGGcCGGAc -3'
miRNA:   3'- -CCCCGu-UUCGGCUCUaGG----------UCCaGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.