Results 21 - 40 of 273 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6363 | 3' | -55.9 | NC_001847.1 | + | 48837 | 0.72 | 0.594496 |
Target: 5'- gCCGCgCGGGGGCGccucGgcCGCgcGGCGCg -3' miRNA: 3'- -GGUG-GCUCCCGCa---CauGUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 65731 | 0.72 | 0.584354 |
Target: 5'- cCCGCCGGGGcggcgcucgagaGCGUGgugGCcCgcgGGCGCa -3' miRNA: 3'- -GGUGGCUCC------------CGCACa--UGuGaa-CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 46195 | 0.72 | 0.574247 |
Target: 5'- gCGCgGAGaggucGGCGUGUccgucGCGCaUGGCGCa -3' miRNA: 3'- gGUGgCUC-----CCGCACA-----UGUGaACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 78666 | 0.72 | 0.594496 |
Target: 5'- gCCugCGucgccGGCGUGcGCACgcgGGCGCu -3' miRNA: 3'- -GGugGCuc---CCGCACaUGUGaa-CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 110645 | 0.72 | 0.584354 |
Target: 5'- aCGCCcacGGCGUGUGCaACUUGGCcaGCg -3' miRNA: 3'- gGUGGcucCCGCACAUG-UGAACCG--CG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 30237 | 0.72 | 0.594496 |
Target: 5'- -gGCCGAGGugcGCGUGU-CGCUggcGGCGUu -3' miRNA: 3'- ggUGGCUCC---CGCACAuGUGAa--CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 85769 | 0.72 | 0.578285 |
Target: 5'- aCGCCGGGGGCagcggccgaugcgGUGCGCgucgagGGUGCg -3' miRNA: 3'- gGUGGCUCCCGca-----------CAUGUGaa----CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 30043 | 0.72 | 0.594496 |
Target: 5'- gCgGCCGuGGGCGacguUGccgGCGCggUGGCGCg -3' miRNA: 3'- -GgUGGCuCCCGC----ACa--UGUGa-ACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 52025 | 0.72 | 0.574247 |
Target: 5'- gCCGCCGAGGaG-GUGcUACGCgaGGCGg -3' miRNA: 3'- -GGUGGCUCC-CgCAC-AUGUGaaCCGCg -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 60349 | 0.72 | 0.578285 |
Target: 5'- aCUACCGAGGGCccGUcgaacGUGCACaccuucgccagggGGCGCg -3' miRNA: 3'- -GGUGGCUCCCG--CA-----CAUGUGaa-----------CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 22107 | 0.72 | 0.574247 |
Target: 5'- gCGCCGGGGGCG---ACAgcgGGCGCg -3' miRNA: 3'- gGUGGCUCCCGCacaUGUgaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 73215 | 0.72 | 0.588407 |
Target: 5'- gCCGCCGcugacgcggaggaggGGGGCGgcgGCGCg-GGCGCg -3' miRNA: 3'- -GGUGGC---------------UCCCGCacaUGUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 124920 | 0.72 | 0.574247 |
Target: 5'- gCGCCGGGGGCG---ACAgcgGGCGCg -3' miRNA: 3'- gGUGGCUCCCGCacaUGUgaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 29561 | 0.71 | 0.635263 |
Target: 5'- gCCGCCGgcgGGGGCGccgGCGCc-GGCGCc -3' miRNA: 3'- -GGUGGC---UCCCGCacaUGUGaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 68827 | 0.71 | 0.651586 |
Target: 5'- cCCGCCGcAGGGCGccgcgaagaGCUcgGGCGCg -3' miRNA: 3'- -GGUGGC-UCCCGCacaug----UGAa-CCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 32133 | 0.71 | 0.665838 |
Target: 5'- gCGCCGGGGGCGg--GgGCgggGGCGg -3' miRNA: 3'- gGUGGCUCCCGCacaUgUGaa-CCGCg -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 67834 | 0.71 | 0.635263 |
Target: 5'- aCGCCGgcGGGGC-UGccgGCGC-UGGCGCg -3' miRNA: 3'- gGUGGC--UCCCGcACa--UGUGaACCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 70694 | 0.71 | 0.645468 |
Target: 5'- gCCGCCGcGGGCGgcgGCGgg-GGCGCc -3' miRNA: 3'- -GGUGGCuCCCGCacaUGUgaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 107108 | 0.71 | 0.6861 |
Target: 5'- gCGCCGcgucuGGCGUGUGCA---GGCGCu -3' miRNA: 3'- gGUGGCuc---CCGCACAUGUgaaCCGCG- -5' |
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6363 | 3' | -55.9 | NC_001847.1 | + | 79604 | 0.71 | 0.634242 |
Target: 5'- gCGCCGGGGGCGuUGUcgccggucgccccGCGgcgGGCGCc -3' miRNA: 3'- gGUGGCUCCCGC-ACA-------------UGUgaaCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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