miRNA display CGI


Results 61 - 80 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 83174 0.7 0.754273
Target:  5'- cGGcGCACCcAGugcaUCACuGcCGCGGGGUCGc -3'
miRNA:   3'- -CC-CGUGGuUC----AGUGuC-GCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 49508 0.7 0.73461
Target:  5'- cGGCGCCGcuUCGCcgGGCGCGGGGcUCc -3'
miRNA:   3'- cCCGUGGUucAGUG--UCGCGUUCC-AGc -5'
6363 5' -55 NC_001847.1 + 124164 0.7 0.763943
Target:  5'- aGGCGCCAAGagACuucGCGCGccGUCGc -3'
miRNA:   3'- cCCGUGGUUCagUGu--CGCGUucCAGC- -5'
6363 5' -55 NC_001847.1 + 1211 0.7 0.758155
Target:  5'- cGGGCGCCAGcUC-CAGCGCGcgccgcccgcaggccAGGUa- -3'
miRNA:   3'- -CCCGUGGUUcAGuGUCGCGU---------------UCCAgc -5'
6363 5' -55 NC_001847.1 + 46482 0.7 0.763943
Target:  5'- aGGGCcuuCCAcGUCGCAGCGUggccGAGcGUUGc -3'
miRNA:   3'- -CCCGu--GGUuCAGUGUCGCG----UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 51780 0.7 0.754273
Target:  5'- cGGCGCCAGcUCGCcccGCGCGucccGGUCGc -3'
miRNA:   3'- cCCGUGGUUcAGUGu--CGCGUu---CCAGC- -5'
6363 5' -55 NC_001847.1 + 49592 0.7 0.724637
Target:  5'- cGGCGCCuGGgCGCAGCGgGAGcUCGg -3'
miRNA:   3'- cCCGUGGuUCaGUGUCGCgUUCcAGC- -5'
6363 5' -55 NC_001847.1 + 27872 0.7 0.744492
Target:  5'- gGGGCGCCGAggacgcggacGUCGCGgaguGCGcCGAGGcCGa -3'
miRNA:   3'- -CCCGUGGUU----------CAGUGU----CGC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 68835 0.7 0.763943
Target:  5'- aGGGCGCCGcgaagAGcUCG-GGCGCGAGG-CGg -3'
miRNA:   3'- -CCCGUGGU-----UC-AGUgUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 104024 0.7 0.758155
Target:  5'- cGGGCGCCAGcUC-CAGCGCGcgccgcccgcaggccAGGUa- -3'
miRNA:   3'- -CCCGUGGUUcAGuGUCGCGU---------------UCCAgc -5'
6363 5' -55 NC_001847.1 + 81946 0.7 0.724637
Target:  5'- cGGCGuCgAGGUgGCGGCGCGccacagccGGGUCGc -3'
miRNA:   3'- cCCGU-GgUUCAgUGUCGCGU--------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 33018 0.7 0.719619
Target:  5'- gGGGCGCgCGGGgcgaggcgcggaCGCGGCGCAggaguuuauugaccGGGUCGc -3'
miRNA:   3'- -CCCGUG-GUUCa-----------GUGUCGCGU--------------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 23429 0.69 0.810301
Target:  5'- gGGGCGuCCGGGgucgucggCGgGGCGUccGGGGUCGu -3'
miRNA:   3'- -CCCGU-GGUUCa-------GUgUCGCG--UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 53837 0.69 0.801326
Target:  5'- gGGGCGCUgaaGAG-C-CGGCGCgGGGGUCa -3'
miRNA:   3'- -CCCGUGG---UUCaGuGUCGCG-UUCCAGc -5'
6363 5' -55 NC_001847.1 + 46533 0.69 0.792193
Target:  5'- gGGGCGgCGgcGG-CGC-GCGCGAGGUCc -3'
miRNA:   3'- -CCCGUgGU--UCaGUGuCGCGUUCCAGc -5'
6363 5' -55 NC_001847.1 + 118831 0.69 0.801326
Target:  5'- aGGGCgcggaGCCGAGggCGCgAGCGCGaguaagaccGGGUUGg -3'
miRNA:   3'- -CCCG-----UGGUUCa-GUG-UCGCGU---------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 40170 0.69 0.792193
Target:  5'- uGGGCGuCCuGGUCGCGGCucuGCGAGuaGUUGg -3'
miRNA:   3'- -CCCGU-GGuUCAGUGUCG---CGUUC--CAGC- -5'
6363 5' -55 NC_001847.1 + 31764 0.69 0.773492
Target:  5'- cGGCGCCgGAGaCGCGGCGCuGGcGUCc -3'
miRNA:   3'- cCCGUGG-UUCaGUGUCGCGuUC-CAGc -5'
6363 5' -55 NC_001847.1 + 118881 0.69 0.773492
Target:  5'- cGGGCGCUcGGUgCACGGgGcCGGGGcCGg -3'
miRNA:   3'- -CCCGUGGuUCA-GUGUCgC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 131524 0.69 0.810301
Target:  5'- -uGCGCCAGGa-GCGGCGCAuguuuGGUCu -3'
miRNA:   3'- ccCGUGGUUCagUGUCGCGUu----CCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.