Results 81 - 100 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 5' | -55 | NC_001847.1 | + | 35520 | 0.67 | 0.889632 |
Target: 5'- -cGCGCCGAG-CGCAuccucgGCGAGGUCGu -3' miRNA: 3'- ccCGUGGUUCaGUGUcg----CGUUCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 88002 | 0.67 | 0.889632 |
Target: 5'- cGGGC-CCGAGgggCGCGGCGuCAucGG-CGa -3' miRNA: 3'- -CCCGuGGUUCa--GUGUCGC-GUu-CCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 95306 | 0.67 | 0.889632 |
Target: 5'- uGGCGCCuccAGgCGCGGCGCcggcAGGGcCGa -3' miRNA: 3'- cCCGUGGu--UCaGUGUCGCG----UUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 48987 | 0.67 | 0.889632 |
Target: 5'- cGGCcucACCGGGggaggggC-CGGCGCGAGGUUa -3' miRNA: 3'- cCCG---UGGUUCa------GuGUCGCGUUCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 113435 | 0.67 | 0.889632 |
Target: 5'- cGGCGCCGcguccaaaaucaGGUCACAGCccaUAAGGaUCa -3' miRNA: 3'- cCCGUGGU------------UCAGUGUCGc--GUUCC-AGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 130186 | 0.67 | 0.889632 |
Target: 5'- cGGGCGCCcGGcCugaagagacggGCGGCGCgGAGGgcgCGg -3' miRNA: 3'- -CCCGUGGuUCaG-----------UGUCGCG-UUCCa--GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 102701 | 0.67 | 0.882656 |
Target: 5'- aGGGCGCCGGGcggGCGGCGaAAGGcCc -3' miRNA: 3'- -CCCGUGGUUCag-UGUCGCgUUCCaGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 125427 | 0.67 | 0.882656 |
Target: 5'- uGGCAagCGAGUgGCcGCGCAGGGcgCGu -3' miRNA: 3'- cCCGUg-GUUCAgUGuCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 22614 | 0.67 | 0.882656 |
Target: 5'- uGGCAagCGAGUgGCcGCGCAGGGcgCGu -3' miRNA: 3'- cCCGUg-GUUCAgUGuCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 12571 | 0.67 | 0.882656 |
Target: 5'- cGGGCGCCGcGUaCGCGGCGCcc--UCGc -3' miRNA: 3'- -CCCGUGGUuCA-GUGUCGCGuuccAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 16577 | 0.67 | 0.882656 |
Target: 5'- cGGGacaGCgGGGUCgggGCGGCGUggGGUg- -3' miRNA: 3'- -CCCg--UGgUUCAG---UGUCGCGuuCCAgc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 100758 | 0.67 | 0.882656 |
Target: 5'- cGGGguCCAGGUCGCcccGCGCcauGG-CGc -3' miRNA: 3'- -CCCguGGUUCAGUGu--CGCGuu-CCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 4608 | 0.67 | 0.882656 |
Target: 5'- aGGCgGCCAcgucGUCGCAGCGCucuGGGa-- -3' miRNA: 3'- cCCG-UGGUu---CAGUGUCGCGu--UCCagc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 100837 | 0.67 | 0.881946 |
Target: 5'- cGGGCggcuccgGCCAGGgcCGgAGCGCcggcccgccgGGGGUCGg -3' miRNA: 3'- -CCCG-------UGGUUCa-GUgUCGCG----------UUCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 63103 | 0.67 | 0.875452 |
Target: 5'- cGGGUAcgccCCGGGgccgcCGCcGCGCAcGGGUCGg -3' miRNA: 3'- -CCCGU----GGUUCa----GUGuCGCGU-UCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 129339 | 0.67 | 0.875452 |
Target: 5'- cGGcGCGCCAAGcgcaagCGCGGUGCcGGGccCGg -3' miRNA: 3'- -CC-CGUGGUUCa-----GUGUCGCGuUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 116065 | 0.67 | 0.875452 |
Target: 5'- cGGGCACCGGGgcgCACuuuCGCAcGG-CGc -3' miRNA: 3'- -CCCGUGGUUCa--GUGuc-GCGUuCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 90477 | 0.67 | 0.875452 |
Target: 5'- cGGCucGCC-GGUCACGGUGCA-GG-CGg -3' miRNA: 3'- cCCG--UGGuUCAGUGUCGCGUuCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 40597 | 0.67 | 0.875452 |
Target: 5'- cGGcGUACUcg--CGCAGCGUggGGUUGg -3' miRNA: 3'- -CC-CGUGGuucaGUGUCGCGuuCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 28139 | 0.67 | 0.875452 |
Target: 5'- uGGGC-CCGAGgacUGCAGCGaCGccGGGUCc -3' miRNA: 3'- -CCCGuGGUUCa--GUGUCGC-GU--UCCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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