miRNA display CGI


Results 81 - 100 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 93123 0.67 0.868024
Target:  5'- aGGCGCCGcgccGG-CACGGCGCAGcuUCGu -3'
miRNA:   3'- cCCGUGGU----UCaGUGUCGCGUUccAGC- -5'
6363 5' -55 NC_001847.1 + 92441 0.66 0.915173
Target:  5'- -aGCAUCAAucGUgcgacaCACGGCGCAGGGcCGg -3'
miRNA:   3'- ccCGUGGUU--CA------GUGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 91769 0.69 0.773492
Target:  5'- cGGGCGCUccGUCgGCGGCGCu-GGcCGc -3'
miRNA:   3'- -CCCGUGGuuCAG-UGUCGCGuuCCaGC- -5'
6363 5' -55 NC_001847.1 + 91711 0.71 0.663412
Target:  5'- cGGGUcgcgacgccgGCCAGcagcaGCAGCGCGAGGUCc -3'
miRNA:   3'- -CCCG----------UGGUUcag--UGUCGCGUUCCAGc -5'
6363 5' -55 NC_001847.1 + 91238 0.65 0.931777
Target:  5'- cGGGguCCGccugcAGcucgcaCGCGGCGCAcaugGGGUCGc -3'
miRNA:   3'- -CCCguGGU-----UCa-----GUGUCGCGU----UCCAGC- -5'
6363 5' -55 NC_001847.1 + 90477 0.67 0.875452
Target:  5'- cGGCucGCC-GGUCACGGUGCA-GG-CGg -3'
miRNA:   3'- cCCG--UGGuUCAGUGUCGCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 90161 0.67 0.896375
Target:  5'- cGGGCgcaugGCCAAG-CGCAGCcuuGCGGGGcugcugCGg -3'
miRNA:   3'- -CCCG-----UGGUUCaGUGUCG---CGUUCCa-----GC- -5'
6363 5' -55 NC_001847.1 + 89887 0.75 0.434026
Target:  5'- gGGGCGCCuucGGggaCGCGGCGCccGAGGUUGu -3'
miRNA:   3'- -CCCGUGGu--UCa--GUGUCGCG--UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 88236 0.71 0.694265
Target:  5'- cGGaGCCGAGgccggCGCGGCGCGGGG-CGc -3'
miRNA:   3'- cCCgUGGUUCa----GUGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 88002 0.67 0.889632
Target:  5'- cGGGC-CCGAGgggCGCGGCGuCAucGG-CGa -3'
miRNA:   3'- -CCCGuGGUUCa--GUGUCGC-GUu-CCaGC- -5'
6363 5' -55 NC_001847.1 + 86054 0.66 0.926487
Target:  5'- aGGCGCUggGggcCACGGaUGCGAGcGUCc -3'
miRNA:   3'- cCCGUGGuuCa--GUGUC-GCGUUC-CAGc -5'
6363 5' -55 NC_001847.1 + 85249 0.7 0.714582
Target:  5'- cGGCGCCAGGU----GCGCGAGGUa- -3'
miRNA:   3'- cCCGUGGUUCAguguCGCGUUCCAgc -5'
6363 5' -55 NC_001847.1 + 84696 0.7 0.763943
Target:  5'- cGGCuuGCCGuccuuGUCGCAGCGC-GGGUUc -3'
miRNA:   3'- cCCG--UGGUu----CAGUGUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 84548 0.74 0.500147
Target:  5'- aGGCGCCcgcGUCGCAGCGCuccAGGUa- -3'
miRNA:   3'- cCCGUGGuu-CAGUGUCGCGu--UCCAgc -5'
6363 5' -55 NC_001847.1 + 83174 0.7 0.754273
Target:  5'- cGGcGCACCcAGugcaUCACuGcCGCGGGGUCGc -3'
miRNA:   3'- -CC-CGUGGuUC----AGUGuC-GCGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 82885 0.66 0.926487
Target:  5'- cGGGCACgCGAGcacgaaGCGGCGCGucuuGUCa -3'
miRNA:   3'- -CCCGUG-GUUCag----UGUCGCGUuc--CAGc -5'
6363 5' -55 NC_001847.1 + 82885 0.71 0.663412
Target:  5'- cGGGCgcgccgcaGCCAAGcCGCGGCGCGcGG-CGc -3'
miRNA:   3'- -CCCG--------UGGUUCaGUGUCGCGUuCCaGC- -5'
6363 5' -55 NC_001847.1 + 82078 0.68 0.85252
Target:  5'- cGGGCucggcgucuggGCCAAG-CGCGGgGCcAGGcUCGg -3'
miRNA:   3'- -CCCG-----------UGGUUCaGUGUCgCGuUCC-AGC- -5'
6363 5' -55 NC_001847.1 + 81946 0.7 0.724637
Target:  5'- cGGCGuCgAGGUgGCGGCGCGccacagccGGGUCGc -3'
miRNA:   3'- cCCGU-GgUUCAgUGUCGCGU--------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 81569 0.66 0.926487
Target:  5'- aGGCAuCCAcGUCGCccagcgcggcgAGCGCGGcGUCGg -3'
miRNA:   3'- cCCGU-GGUuCAGUG-----------UCGCGUUcCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.