Results 41 - 60 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6363 | 5' | -55 | NC_001847.1 | + | 97431 | 0.65 | 0.931777 |
Target: 5'- cGGcGCGCCcAGcaGCAGCGCGcacgugacgAGGUCc -3' miRNA: 3'- -CC-CGUGGuUCagUGUCGCGU---------UCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 99943 | 0.65 | 0.931777 |
Target: 5'- aGGGCGCCcAGcCGCGcGCGCuccuccucgAAGGcCGc -3' miRNA: 3'- -CCCGUGGuUCaGUGU-CGCG---------UUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 37032 | 0.65 | 0.931777 |
Target: 5'- gGGGCGCCGGGcUCGCAcucuagccuGgGCuGGGggCGg -3' miRNA: 3'- -CCCGUGGUUC-AGUGU---------CgCGuUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 75383 | 0.65 | 0.931777 |
Target: 5'- uGGGaCACCGucucgcGUCGCcGcCGCGAGG-CGg -3' miRNA: 3'- -CCC-GUGGUu-----CAGUGuC-GCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 91238 | 0.65 | 0.931777 |
Target: 5'- cGGGguCCGccugcAGcucgcaCGCGGCGCAcaugGGGUCGc -3' miRNA: 3'- -CCCguGGU-----UCa-----GUGUCGCGU----UCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 52844 | 0.66 | 0.920953 |
Target: 5'- cGGGCGCC-GGUUAacacCAGCuccaGCAAGG-CGu -3' miRNA: 3'- -CCCGUGGuUCAGU----GUCG----CGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 51524 | 0.66 | 0.920953 |
Target: 5'- cGGCGCCGgcaggcGGggGCGGCGCccAGGcGUCGg -3' miRNA: 3'- cCCGUGGU------UCagUGUCGCG--UUC-CAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 22369 | 0.66 | 0.915173 |
Target: 5'- gGGGCGCC-AGUCcuCGGgGCAgaAGG-CGc -3' miRNA: 3'- -CCCGUGGuUCAGu-GUCgCGU--UCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 92441 | 0.66 | 0.915173 |
Target: 5'- -aGCAUCAAucGUgcgacaCACGGCGCAGGGcCGg -3' miRNA: 3'- ccCGUGGUU--CA------GUGUCGCGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 12021 | 0.66 | 0.915173 |
Target: 5'- gGGGCGCCGgcgaGGUCGUAGgcaucCGCAGGGg-- -3' miRNA: 3'- -CCCGUGGU----UCAGUGUC-----GCGUUCCagc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 29578 | 0.66 | 0.915173 |
Target: 5'- cGGCGCCGGcGcCGCcGCGCcGGGcCGg -3' miRNA: 3'- cCCGUGGUU-CaGUGuCGCGuUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 31930 | 0.66 | 0.915173 |
Target: 5'- cGGGCcCCGgucucGGUCGgAGCGC--GGUCc -3' miRNA: 3'- -CCCGuGGU-----UCAGUgUCGCGuuCCAGc -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 49960 | 0.66 | 0.915173 |
Target: 5'- cGGCGCCGAG-UAC-GCGCA-GGcCGu -3' miRNA: 3'- cCCGUGGUUCaGUGuCGCGUuCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 95656 | 0.66 | 0.915173 |
Target: 5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3' miRNA: 3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 95710 | 0.66 | 0.915173 |
Target: 5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3' miRNA: 3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 95764 | 0.66 | 0.915173 |
Target: 5'- gGGGCgGCgCGGGcCGCucuGGCGCGGGGggCGg -3' miRNA: 3'- -CCCG-UG-GUUCaGUG---UCGCGUUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 2221 | 0.66 | 0.920953 |
Target: 5'- aGGcCGCCAGcGcCGCGGCGCuGGGcgCGg -3' miRNA: 3'- cCC-GUGGUU-CaGUGUCGCGuUCCa-GC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 46317 | 0.66 | 0.920953 |
Target: 5'- -aGCGCCGAG-CGCAGCacggccgcccGCGGGGcCGc -3' miRNA: 3'- ccCGUGGUUCaGUGUCG----------CGUUCCaGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 113918 | 0.66 | 0.920953 |
Target: 5'- -aGCAgCGAGaggaaGCAGCGCGcGGUCGc -3' miRNA: 3'- ccCGUgGUUCag---UGUCGCGUuCCAGC- -5' |
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6363 | 5' | -55 | NC_001847.1 | + | 14353 | 0.66 | 0.920953 |
Target: 5'- cGGCGCCugcgGGgaacgcCGcCAGCGCGcGGUCGu -3' miRNA: 3'- cCCGUGGu---UCa-----GU-GUCGCGUuCCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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