miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6364 5' -56.1 NC_001847.1 + 116571 0.66 0.887794
Target:  5'- gCGCAcGUGGGcaucugcgcucUgggcgcagcgcugccGCUCUGCG-GCGCGGa -3'
miRNA:   3'- -GCGUuCACCU-----------A---------------CGAGACGCuCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 49797 0.66 0.885011
Target:  5'- aCGCccccGGGUGCgcugCUGCuGGGCGCGc -3'
miRNA:   3'- -GCGuucaCCUACGa---GACG-CUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 75405 0.66 0.885011
Target:  5'- aGCGAGUcGA-GCUCgcgccggacGcCGAGCGCGAu -3'
miRNA:   3'- gCGUUCAcCUaCGAGa--------C-GCUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 81106 0.66 0.885011
Target:  5'- uCGCccAGUGGcUGCUCca-GAGCGCGc -3'
miRNA:   3'- -GCGu-UCACCuACGAGacgCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 78850 0.66 0.877893
Target:  5'- gGCGAGUagcuGGuGUGCUC-GCGGuGCGCGc -3'
miRNA:   3'- gCGUUCA----CC-UACGAGaCGCU-CGCGCu -5'
6364 5' -56.1 NC_001847.1 + 32796 0.66 0.877893
Target:  5'- gCGCGAGUccGAgcGCUCUuugagcgcgcGCGAGCGCGc -3'
miRNA:   3'- -GCGUUCAc-CUa-CGAGA----------CGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 58912 0.66 0.87055
Target:  5'- cCGCGGGcGGGUGU--UGCGcAGCaGCGAa -3'
miRNA:   3'- -GCGUUCaCCUACGagACGC-UCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 120777 0.66 0.87055
Target:  5'- cCGCGGccGUGGca--UCUGCGAGCGuCGGc -3'
miRNA:   3'- -GCGUU--CACCuacgAGACGCUCGC-GCU- -5'
6364 5' -56.1 NC_001847.1 + 43663 0.66 0.868304
Target:  5'- gGCGAGUGuGUGCUCUGCaaucuucugcucacGccGGCGCa- -3'
miRNA:   3'- gCGUUCACcUACGAGACG--------------C--UCGCGcu -5'
6364 5' -56.1 NC_001847.1 + 22481 0.66 0.863753
Target:  5'- uCGCAGGUGGGgcaaggcuggccgugGCUCaugGCG-GCgGCGGg -3'
miRNA:   3'- -GCGUUCACCUa--------------CGAGa--CGCuCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 125294 0.66 0.863753
Target:  5'- uCGCAGGUGGGgcaaggcuggccgugGCUCaugGCG-GCgGCGGg -3'
miRNA:   3'- -GCGUUCACCUa--------------CGAGa--CGCuCG-CGCU- -5'
6364 5' -56.1 NC_001847.1 + 80198 0.66 0.862987
Target:  5'- uGCGGGcGGGUGCgCcGCGaAGCGCa- -3'
miRNA:   3'- gCGUUCaCCUACGaGaCGC-UCGCGcu -5'
6364 5' -56.1 NC_001847.1 + 4568 0.66 0.862987
Target:  5'- uGgAAGUGGAaGUggUGCGGGuCGCGGu -3'
miRNA:   3'- gCgUUCACCUaCGagACGCUC-GCGCU- -5'
6364 5' -56.1 NC_001847.1 + 68098 0.66 0.860677
Target:  5'- gCGCGagcGGUGGugacgaugacuucgGUGgUCgcggGCGAGCGCGc -3'
miRNA:   3'- -GCGU---UCACC--------------UACgAGa---CGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 51213 0.66 0.855212
Target:  5'- gCGCAcuucgAGcGGGcccUGCUC-GCGGGCGCGc -3'
miRNA:   3'- -GCGU-----UCaCCU---ACGAGaCGCUCGCGCu -5'
6364 5' -56.1 NC_001847.1 + 90157 0.67 0.84723
Target:  5'- uGCAGGUGGAUgGCUUUGCc--CGgGAa -3'
miRNA:   3'- gCGUUCACCUA-CGAGACGcucGCgCU- -5'
6364 5' -56.1 NC_001847.1 + 36662 0.67 0.84723
Target:  5'- uCGCAGGUGGggGCUU--CGAuGCGCc- -3'
miRNA:   3'- -GCGUUCACCuaCGAGacGCU-CGCGcu -5'
6364 5' -56.1 NC_001847.1 + 65081 0.67 0.839047
Target:  5'- cCGCAGGacgGGcaGUGCUaagCUGCGAGCgagccGCGGc -3'
miRNA:   3'- -GCGUUCa--CC--UACGA---GACGCUCG-----CGCU- -5'
6364 5' -56.1 NC_001847.1 + 76 0.67 0.830672
Target:  5'- gGCGGGgugggGGAUGggC-GCgGAGCGCGAg -3'
miRNA:   3'- gCGUUCa----CCUACgaGaCG-CUCGCGCU- -5'
6364 5' -56.1 NC_001847.1 + 6870 0.67 0.829824
Target:  5'- gCGCGGGUagggccuugccgaGGAgcagUGCgUCgGCGAGCGCGc -3'
miRNA:   3'- -GCGUUCA-------------CCU----ACG-AGaCGCUCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.