Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6364 | 5' | -56.1 | NC_001847.1 | + | 116571 | 0.66 | 0.887794 |
Target: 5'- gCGCAcGUGGGcaucugcgcucUgggcgcagcgcugccGCUCUGCG-GCGCGGa -3' miRNA: 3'- -GCGUuCACCU-----------A---------------CGAGACGCuCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 75405 | 0.66 | 0.885011 |
Target: 5'- aGCGAGUcGA-GCUCgcgccggacGcCGAGCGCGAu -3' miRNA: 3'- gCGUUCAcCUaCGAGa--------C-GCUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 81106 | 0.66 | 0.885011 |
Target: 5'- uCGCccAGUGGcUGCUCca-GAGCGCGc -3' miRNA: 3'- -GCGu-UCACCuACGAGacgCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 49797 | 0.66 | 0.885011 |
Target: 5'- aCGCccccGGGUGCgcugCUGCuGGGCGCGc -3' miRNA: 3'- -GCGuucaCCUACGa---GACG-CUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 32796 | 0.66 | 0.877893 |
Target: 5'- gCGCGAGUccGAgcGCUCUuugagcgcgcGCGAGCGCGc -3' miRNA: 3'- -GCGUUCAc-CUa-CGAGA----------CGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 78850 | 0.66 | 0.877893 |
Target: 5'- gGCGAGUagcuGGuGUGCUC-GCGGuGCGCGc -3' miRNA: 3'- gCGUUCA----CC-UACGAGaCGCU-CGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 120777 | 0.66 | 0.87055 |
Target: 5'- cCGCGGccGUGGca--UCUGCGAGCGuCGGc -3' miRNA: 3'- -GCGUU--CACCuacgAGACGCUCGC-GCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 58912 | 0.66 | 0.87055 |
Target: 5'- cCGCGGGcGGGUGU--UGCGcAGCaGCGAa -3' miRNA: 3'- -GCGUUCaCCUACGagACGC-UCG-CGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 43663 | 0.66 | 0.868304 |
Target: 5'- gGCGAGUGuGUGCUCUGCaaucuucugcucacGccGGCGCa- -3' miRNA: 3'- gCGUUCACcUACGAGACG--------------C--UCGCGcu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 125294 | 0.66 | 0.863753 |
Target: 5'- uCGCAGGUGGGgcaaggcuggccgugGCUCaugGCG-GCgGCGGg -3' miRNA: 3'- -GCGUUCACCUa--------------CGAGa--CGCuCG-CGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 22481 | 0.66 | 0.863753 |
Target: 5'- uCGCAGGUGGGgcaaggcuggccgugGCUCaugGCG-GCgGCGGg -3' miRNA: 3'- -GCGUUCACCUa--------------CGAGa--CGCuCG-CGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 4568 | 0.66 | 0.862987 |
Target: 5'- uGgAAGUGGAaGUggUGCGGGuCGCGGu -3' miRNA: 3'- gCgUUCACCUaCGagACGCUC-GCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 80198 | 0.66 | 0.862987 |
Target: 5'- uGCGGGcGGGUGCgCcGCGaAGCGCa- -3' miRNA: 3'- gCGUUCaCCUACGaGaCGC-UCGCGcu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 68098 | 0.66 | 0.860677 |
Target: 5'- gCGCGagcGGUGGugacgaugacuucgGUGgUCgcggGCGAGCGCGc -3' miRNA: 3'- -GCGU---UCACC--------------UACgAGa---CGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 51213 | 0.66 | 0.855212 |
Target: 5'- gCGCAcuucgAGcGGGcccUGCUC-GCGGGCGCGc -3' miRNA: 3'- -GCGU-----UCaCCU---ACGAGaCGCUCGCGCu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 90157 | 0.67 | 0.84723 |
Target: 5'- uGCAGGUGGAUgGCUUUGCc--CGgGAa -3' miRNA: 3'- gCGUUCACCUA-CGAGACGcucGCgCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 36662 | 0.67 | 0.84723 |
Target: 5'- uCGCAGGUGGggGCUU--CGAuGCGCc- -3' miRNA: 3'- -GCGUUCACCuaCGAGacGCU-CGCGcu -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 65081 | 0.67 | 0.839047 |
Target: 5'- cCGCAGGacgGGcaGUGCUaagCUGCGAGCgagccGCGGc -3' miRNA: 3'- -GCGUUCa--CC--UACGA---GACGCUCG-----CGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 76 | 0.67 | 0.830672 |
Target: 5'- gGCGGGgugggGGAUGggC-GCgGAGCGCGAg -3' miRNA: 3'- gCGUUCa----CCUACgaGaCG-CUCGCGCU- -5' |
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6364 | 5' | -56.1 | NC_001847.1 | + | 6870 | 0.67 | 0.829824 |
Target: 5'- gCGCGGGUagggccuugccgaGGAgcagUGCgUCgGCGAGCGCGc -3' miRNA: 3'- -GCGUUCA-------------CCU----ACG-AGaCGCUCGCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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