miRNA display CGI


Results 1 - 20 of 678 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 3' -61.6 NC_001847.1 + 134756 0.67 0.595989
Target:  5'- -cGGUCGgagCGCgGUC-CGGcGCGCgGCg -3'
miRNA:   3'- gaCCAGCa--GCGgCGGuGCC-UGCGgCG- -5'
6366 3' -61.6 NC_001847.1 + 134683 0.68 0.519211
Target:  5'- gCUGccGcCGcCGCCGCCGCcGcCGCCGCu -3'
miRNA:   3'- -GAC--CaGCaGCGGCGGUGcCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 134650 0.67 0.615542
Target:  5'- -gGGUUGgcgCGCgGCCGCcc-CGCCGCc -3'
miRNA:   3'- gaCCAGCa--GCGgCGGUGccuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 134595 0.74 0.274297
Target:  5'- gCUGG-CGUcCGCCGCCACGuuCcCCGCg -3'
miRNA:   3'- -GACCaGCA-GCGGCGGUGCcuGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 134535 0.74 0.268153
Target:  5'- -gGGcCGcgCGCCGCUGCGGAgcgGCCGCg -3'
miRNA:   3'- gaCCaGCa-GCGGCGGUGCCUg--CGGCG- -5'
6366 3' -61.6 NC_001847.1 + 134374 0.66 0.674254
Target:  5'- -aGGcCGgCGCCGCCGgCGGcGgGCCGg -3'
miRNA:   3'- gaCCaGCaGCGGCGGU-GCC-UgCGGCg -5'
6366 3' -61.6 NC_001847.1 + 134144 0.67 0.605757
Target:  5'- cCUGGUggagcgCGUgcCGCCGCCggcgGCGGAagcccCGCCGg -3'
miRNA:   3'- -GACCA------GCA--GCGGCGG----UGCCU-----GCGGCg -5'
6366 3' -61.6 NC_001847.1 + 134110 0.7 0.446637
Target:  5'- -cGcUCGU-GCUGCUGCGGcGCGCCGCg -3'
miRNA:   3'- gaCcAGCAgCGGCGGUGCC-UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 134027 0.72 0.327522
Target:  5'- gCUGGUgcugGagGCCGCgGCGG-CGCCGCc -3'
miRNA:   3'- -GACCAg---CagCGGCGgUGCCuGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 133990 0.67 0.595989
Target:  5'- -cGGcCG-CGCUGCCGgagccgcgcgcCGaGGCGCCGCc -3'
miRNA:   3'- gaCCaGCaGCGGCGGU-----------GC-CUGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 133885 0.67 0.595989
Target:  5'- gCUGGgggcUCGgcgCGCCGCUGCGGcCGgUGUa -3'
miRNA:   3'- -GACC----AGCa--GCGGCGGUGCCuGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 133664 0.73 0.306708
Target:  5'- -aGG-CGcCGCCGCUGCGGcucUGCCGCg -3'
miRNA:   3'- gaCCaGCaGCGGCGGUGCCu--GCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 133518 0.68 0.519211
Target:  5'- cCUGcGcgccgCGgUGCUGCCGCGGcgcaguGCGCCGCg -3'
miRNA:   3'- -GAC-Ca----GCaGCGGCGGUGCC------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 133422 0.66 0.653752
Target:  5'- gCUGGcCGcggCGCgGCgGCGGcugaucgugcucgACGCCGUg -3'
miRNA:   3'- -GACCaGCa--GCGgCGgUGCC-------------UGCGGCG- -5'
6366 3' -61.6 NC_001847.1 + 133224 0.69 0.482265
Target:  5'- gUGGcCGccgCGCCGCgGCGGGCucucGCaCGCg -3'
miRNA:   3'- gACCaGCa--GCGGCGgUGCCUG----CG-GCG- -5'
6366 3' -61.6 NC_001847.1 + 133182 0.7 0.43796
Target:  5'- gCUGG-CGgCGCCGCC-CGGcgaggacgaGCGCCGg -3'
miRNA:   3'- -GACCaGCaGCGGCGGuGCC---------UGCGGCg -5'
6366 3' -61.6 NC_001847.1 + 133073 0.68 0.519211
Target:  5'- -cGGggCGcUCGCCGCCACcgcugcGGCGgCGCg -3'
miRNA:   3'- gaCCa-GC-AGCGGCGGUGc-----CUGCgGCG- -5'
6366 3' -61.6 NC_001847.1 + 133035 0.69 0.464273
Target:  5'- gCUGGccgagaucgCGgccCGCCGCCgcGCGGGCcCCGCg -3'
miRNA:   3'- -GACCa--------GCa--GCGGCGG--UGCCUGcGGCG- -5'
6366 3' -61.6 NC_001847.1 + 132959 0.7 0.420901
Target:  5'- -aGGUCGcggCGCgGCuCGCGGACcacCCGCu -3'
miRNA:   3'- gaCCAGCa--GCGgCG-GUGCCUGc--GGCG- -5'
6366 3' -61.6 NC_001847.1 + 132955 0.72 0.327522
Target:  5'- -aGGUgCGcccgcaCGCCGCCcaggcggcGCGGGCGCUGCg -3'
miRNA:   3'- gaCCA-GCa-----GCGGCGG--------UGCCUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.