Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6366 | 5' | -49.6 | NC_001847.1 | + | 134103 | 0.7 | 0.954569 |
Target: 5'- cGGGAGACGCUcgUGCUGCUGC-GGcgCg -3' miRNA: 3'- -CCUUCUGUGG--ACGGUGAUGuUCuaGa -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 133662 | 0.67 | 0.989226 |
Target: 5'- -cGAGGCGCC-GCCGCUGC-GGcUCUg -3' miRNA: 3'- ccUUCUGUGGaCGGUGAUGuUCuAGA- -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 133174 | 0.67 | 0.990588 |
Target: 5'- gGGGAGGCGCUggcggcGCCGCccgGCGAGGa-- -3' miRNA: 3'- -CCUUCUGUGGa-----CGGUGa--UGUUCUaga -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 132678 | 0.67 | 0.987715 |
Target: 5'- cGggGGCGCC-GCCGCccGCucGAUCg -3' miRNA: 3'- cCuuCUGUGGaCGGUGa-UGuuCUAGa -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 132141 | 0.67 | 0.989226 |
Target: 5'- uGGgcGGCGCugCUGCCGC-GCAGGGUg- -3' miRNA: 3'- -CCuuCUGUG--GACGGUGaUGUUCUAga -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 130626 | 0.69 | 0.972155 |
Target: 5'- cGAGGGCGCCgagGCCGaagACGcggAGAUCg -3' miRNA: 3'- cCUUCUGUGGa--CGGUga-UGU---UCUAGa -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 130267 | 0.67 | 0.989226 |
Target: 5'- cGggGGC-CCUGCCGCUGCc------ -3' miRNA: 3'- cCuuCUGuGGACGGUGAUGuucuaga -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 130219 | 0.73 | 0.871069 |
Target: 5'- gGGggGGCGCUguUGCCGCcgGCGcGGUCg -3' miRNA: 3'- -CCuuCUGUGG--ACGGUGa-UGUuCUAGa -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 129428 | 0.67 | 0.991811 |
Target: 5'- ---cGACGCCcGCCuGCUGCGGGGUg- -3' miRNA: 3'- ccuuCUGUGGaCGG-UGAUGUUCUAga -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 125202 | 0.7 | 0.945798 |
Target: 5'- aGAAGGCGCCcggGCCGCgGCGAGcgUg -3' miRNA: 3'- cCUUCUGUGGa--CGGUGaUGUUCuaGa -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 124720 | 0.66 | 0.996759 |
Target: 5'- aGGAGACgGCCgagGCCGCggGCGAGGc-- -3' miRNA: 3'- cCUUCUG-UGGa--CGGUGa-UGUUCUaga -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 119091 | 0.66 | 0.993879 |
Target: 5'- -aGAGGCGCCgcgGCCGCcGCGGGGc-- -3' miRNA: 3'- ccUUCUGUGGa--CGGUGaUGUUCUaga -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 116224 | 1.11 | 0.007219 |
Target: 5'- uGGAAGACACCUGCCACUACAAGAUCUg -3' miRNA: 3'- -CCUUCUGUGGACGGUGAUGUUCUAGA- -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 116095 | 0.66 | 0.995982 |
Target: 5'- gGGAcGACgaugacgacgccggGCCUGCCG--GCGGGGUCa -3' miRNA: 3'- -CCUuCUG--------------UGGACGGUgaUGUUCUAGa -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 114232 | 0.68 | 0.986045 |
Target: 5'- uGAGGcCGCCgaguguguguuuUGCCGCUGCGGGggCg -3' miRNA: 3'- cCUUCuGUGG------------ACGGUGAUGUUCuaGa -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 113861 | 0.66 | 0.994742 |
Target: 5'- --uGGAUGCCgcgGuCCGCUACaAAGAUCg -3' miRNA: 3'- ccuUCUGUGGa--C-GGUGAUG-UUCUAGa -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 108858 | 0.69 | 0.972155 |
Target: 5'- -cGAGuCACUUGCCGCaGCGAGcgCUa -3' miRNA: 3'- ccUUCuGUGGACGGUGaUGUUCuaGA- -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 108651 | 0.67 | 0.991811 |
Target: 5'- aGAAGugGCCgggGCCGCggACGAGuuUCc -3' miRNA: 3'- cCUUCugUGGa--CGGUGa-UGUUCu-AGa -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 99789 | 0.69 | 0.969111 |
Target: 5'- cGGggGGCAgC-GCCugUgguGCGGGGUCg -3' miRNA: 3'- -CCuuCUGUgGaCGGugA---UGUUCUAGa -5' |
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6366 | 5' | -49.6 | NC_001847.1 | + | 94356 | 0.67 | 0.991926 |
Target: 5'- aGGAGGACGCuggcgcggcggcguCUGCCGCgcGCAcgugacgcuuuuuucGGAUCg -3' miRNA: 3'- -CCUUCUGUG--------------GACGGUGa-UGU---------------UCUAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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