miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 5' -54.8 NC_001847.1 + 109147 0.66 0.931938
Target:  5'- ----gUGCGcGCCuGCGCGCCCGc-- -3'
miRNA:   3'- cauaaGCGUaUGGcCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 90700 0.66 0.921081
Target:  5'- ----gCGCGUGCC-GCGCGCCgCGc-- -3'
miRNA:   3'- cauaaGCGUAUGGcCGCGCGG-GCaac -5'
6367 5' -54.8 NC_001847.1 + 69137 0.66 0.921081
Target:  5'- ----gCGCGgccGCCguGGCGUGCCCGgcGg -3'
miRNA:   3'- cauaaGCGUa--UGG--CCGCGCGGGCaaC- -5'
6367 5' -54.8 NC_001847.1 + 21626 0.66 0.920512
Target:  5'- ----gCGCuugGCCGGCGCgggccgcGCCCGg-- -3'
miRNA:   3'- cauaaGCGua-UGGCCGCG-------CGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 41931 0.66 0.919367
Target:  5'- cGUGUUCG-AUACCuggaGGCGCacgcugcagaugucGCUCGUUGa -3'
miRNA:   3'- -CAUAAGCgUAUGG----CCGCG--------------CGGGCAAC- -5'
6367 5' -54.8 NC_001847.1 + 52258 0.66 0.915281
Target:  5'- ----cCGCGgcuugGCugCGGCGCGCCCGc-- -3'
miRNA:   3'- cauaaGCGUa----UG--GCCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 61859 0.66 0.915281
Target:  5'- cGUAggccgCGCcUGCCGGCGC-CCgCGggGg -3'
miRNA:   3'- -CAUaa---GCGuAUGGCCGCGcGG-GCaaC- -5'
6367 5' -54.8 NC_001847.1 + 119608 0.66 0.915281
Target:  5'- ----gCGCGcACCGGCGCcagcaGCCCGc-- -3'
miRNA:   3'- cauaaGCGUaUGGCCGCG-----CGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 103373 0.66 0.902945
Target:  5'- ----cCGUGUugGCCGGCGCGCgCGg-- -3'
miRNA:   3'- cauaaGCGUA--UGGCCGCGCGgGCaac -5'
6367 5' -54.8 NC_001847.1 + 30698 0.66 0.921081
Target:  5'- ----aCGUGUACCuGCGCGCCgCGg-- -3'
miRNA:   3'- cauaaGCGUAUGGcCGCGCGG-GCaac -5'
6367 5' -54.8 NC_001847.1 + 62721 0.66 0.921081
Target:  5'- aUGUUcCGCGUugCGGCcGUGgCCGUc- -3'
miRNA:   3'- cAUAA-GCGUAugGCCG-CGCgGGCAac -5'
6367 5' -54.8 NC_001847.1 + 67075 0.66 0.921081
Target:  5'- -cGUUCGCcccGCCgcaGGCGCGCCgCGa-- -3'
miRNA:   3'- caUAAGCGua-UGG---CCGCGCGG-GCaac -5'
6367 5' -54.8 NC_001847.1 + 69485 0.66 0.931938
Target:  5'- ----gCGCgaugGUGCgGGCGCGCacgcggCCGUUGg -3'
miRNA:   3'- cauaaGCG----UAUGgCCGCGCG------GGCAAC- -5'
6367 5' -54.8 NC_001847.1 + 6334 0.66 0.931938
Target:  5'- ----gUGCGcGCCuGCGCGCCCGc-- -3'
miRNA:   3'- cauaaGCGUaUGGcCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 104625 0.66 0.928785
Target:  5'- ---gUCGCGcucGCCGGCacugucgucuagcgcGCGCCCGa-- -3'
miRNA:   3'- cauaAGCGUa--UGGCCG---------------CGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 691 0.66 0.928785
Target:  5'- uGUGUUCGCAcagacucgucuuuauUGCCGccguCGCGCCCc--- -3'
miRNA:   3'- -CAUAAGCGU---------------AUGGCc---GCGCGGGcaac -5'
6367 5' -54.8 NC_001847.1 + 11545 0.66 0.926634
Target:  5'- -cGUUCGCGU-CUGGaguGCGCCCa--- -3'
miRNA:   3'- caUAAGCGUAuGGCCg--CGCGGGcaac -5'
6367 5' -54.8 NC_001847.1 + 10209 0.66 0.926634
Target:  5'- ----cCGCcggGCCcagGGCGCGCCCGc-- -3'
miRNA:   3'- cauaaGCGua-UGG---CCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 88704 0.66 0.926634
Target:  5'- ----gCGCAUccccACCGcCGCGCCCGa-- -3'
miRNA:   3'- cauaaGCGUA----UGGCcGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 104121 0.66 0.926634
Target:  5'- -----gGCGuUGCCGGCGCGCgCGc-- -3'
miRNA:   3'- cauaagCGU-AUGGCCGCGCGgGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.