miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 5' -54.8 NC_001847.1 + 49551 0.8 0.261756
Target:  5'- ----gCGCcuuUGCCGGCGCGCCCGUc- -3'
miRNA:   3'- cauaaGCGu--AUGGCCGCGCGGGCAac -5'
6367 5' -54.8 NC_001847.1 + 39629 0.69 0.79173
Target:  5'- -----gGCAaGCCuGGCGCGCCCGc-- -3'
miRNA:   3'- cauaagCGUaUGG-CCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 124546 0.69 0.800909
Target:  5'- ----gCGCGgGCCGGCGCcgGCCCGc-- -3'
miRNA:   3'- cauaaGCGUaUGGCCGCG--CGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 109147 0.66 0.931938
Target:  5'- ----gUGCGcGCCuGCGCGCCCGc-- -3'
miRNA:   3'- cauaaGCGUaUGGcCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 4227 0.74 0.538285
Target:  5'- ----gCGCgGUGCCGGCGCGCgCCGg-- -3'
miRNA:   3'- cauaaGCG-UAUGGCCGCGCG-GGCaac -5'
6367 5' -54.8 NC_001847.1 + 52267 0.72 0.599869
Target:  5'- cGUGcUCGCGUGCCcGCGCGCCgGc-- -3'
miRNA:   3'- -CAUaAGCGUAUGGcCGCGCGGgCaac -5'
6367 5' -54.8 NC_001847.1 + 10428 0.72 0.651918
Target:  5'- -gGUUCGCGcUGCCGccccCGCGCCCGg-- -3'
miRNA:   3'- caUAAGCGU-AUGGCc---GCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 48152 0.71 0.70355
Target:  5'- ----cCGCcggGCCGGCGCGCgCCGg-- -3'
miRNA:   3'- cauaaGCGua-UGGCCGCGCG-GGCaac -5'
6367 5' -54.8 NC_001847.1 + 113497 0.7 0.723831
Target:  5'- ---cUCGCccuCCGGuCGCGCCCGg-- -3'
miRNA:   3'- cauaAGCGuauGGCC-GCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 11295 0.69 0.79173
Target:  5'- aGUAcgCGCGaagAUgGGCGCGCCCGc-- -3'
miRNA:   3'- -CAUaaGCGUa--UGgCCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 37712 0.7 0.753615
Target:  5'- cGUGcgCGCugcUGCUgGGCGCGCCgGUUGu -3'
miRNA:   3'- -CAUaaGCGu--AUGG-CCGCGCGGgCAAC- -5'
6367 5' -54.8 NC_001847.1 + 113047 0.7 0.723831
Target:  5'- ---gUCGCcc-CCGGCGCGCCUGc-- -3'
miRNA:   3'- cauaAGCGuauGGCCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 121728 0.77 0.347099
Target:  5'- ----gCGCGcGCUGGCGCGCCCGUc- -3'
miRNA:   3'- cauaaGCGUaUGGCCGCGCGGGCAac -5'
6367 5' -54.8 NC_001847.1 + 3474 0.69 0.772933
Target:  5'- ----gCGCGcGCCGGCGCGCCg---- -3'
miRNA:   3'- cauaaGCGUaUGGCCGCGCGGgcaac -5'
6367 5' -54.8 NC_001847.1 + 43795 0.74 0.508282
Target:  5'- ----gCGCGcGCCGGCGCGCCgGUc- -3'
miRNA:   3'- cauaaGCGUaUGGCCGCGCGGgCAac -5'
6367 5' -54.8 NC_001847.1 + 81189 0.7 0.723831
Target:  5'- ---cUCGCGgcggcgccaGCCGGCGCGCgCGUa- -3'
miRNA:   3'- cauaAGCGUa--------UGGCCGCGCGgGCAac -5'
6367 5' -54.8 NC_001847.1 + 16663 0.69 0.782401
Target:  5'- ----gCGCcUACaGGCGCGCCCGg-- -3'
miRNA:   3'- cauaaGCGuAUGgCCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 113412 0.69 0.800909
Target:  5'- ----gCGCGgGCCGGCGCcgGCCCGc-- -3'
miRNA:   3'- cauaaGCGUaUGGCCGCG--CGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 104638 0.74 0.518209
Target:  5'- ----gCGCucacguCCGGCGCGCCCGUc- -3'
miRNA:   3'- cauaaGCGuau---GGCCGCGCGGGCAac -5'
6367 5' -54.8 NC_001847.1 + 32010 0.72 0.641507
Target:  5'- --cUUCGCGcGCCGGCG-GCCCGc-- -3'
miRNA:   3'- cauAAGCGUaUGGCCGCgCGGGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.